PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004494023.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 307aa    MW: 35086.9 Da    PI: 8.0129
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004494023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1484.2e-1541126190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY+eYA++ GF  ++++s+k  ++ge     + Cs+eg++ ++++    + +t +++  +C  k+++k++kdg w++tk+e  H He +
  XP_004494023.1  41 SFYEEYASRKGFGWKIRSSRKG-KDGEPCYLILSCSREGSKVSKNSC---TLKTLPTKVNNCPVKIVIKLDKDGLWYITKFEPGHIHETS 126
                     5****************99998.7888999**********9998766...8899999999***************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-1241126IPR004330FAR1 DNA binding domain
PfamPF105511.4E-28222307IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDCGTIEDEG IRVDNLDDDD NTCCWEPATG MCFSCLEEVK SFYEEYASRK GFGWKIRSSR  60
KGKDGEPCYL ILSCSREGSK VSKNSCTLKT LPTKVNNCPV KIVIKLDKDG LWYITKFEPG  120
HIHETSPTKA RLFKANKKMN LRKITIQIND DAGVRINKTF QSLVKDAGRH ENVPFCERDV  180
RNYVNKERRA IGKEDLDDDF HVRNVFWADA RSRAAYEYFG DVVTFDTTYL TNKYDMHFAT  240
FVGVNHHGQS TLLGCGLLSG EDTNSFVWLF KSWLHFMLGK APLGIVTDQC KAMKNAIELV  300
FPTTRHR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004494023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1365071e-106AC136507.19 Medicago truncatula clone mth2-24o19, complete sequence.
GenBankAC1469411e-106AC146941.8 Medicago truncatula clone mth2-133o10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004494023.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A1S2XSU80.0A0A1S2XSU8_CICAR; protein FAR-RED IMPAIRED RESPONSE 1-like
STRINGXP_004494023.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.13e-48FAR1 family protein