PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004493958.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

S1Fa-like

Protein Properties

Length: 84aa MW: 9297 Da PI: 10.5725

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004493958.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	130.6	4.3e-41	19	84	5	70
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++ ++G+nPGlivllvvgglll+fl+gny+ly+yaqk++PPrkkkP+skkk+k+e+l+qGv++PGe XP_004493958.1 19 NAGSQGFNPGLIVLLVVGGLLLTFLIGNYALYMYAQKTIPPRKKKPISKKKMKKERLRQGVSAPGE 84 56789************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	5.7E-40	21	84	IPR006779	DNA binding protein S1FA
ProDom	PD019013	7.0E-4	22	84	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 84 aa Download sequence Send to blast
MADDFEFADK VPPSFDRVNA GSQGFNPGLI VLLVVGGLLL TFLIGNYALY MYAQKTIPPR 60 KKKPISKKKM KKERLRQGVS APGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004493958.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004493958.1	5e-55	DNA-binding protein S1FA-like
Swissprot	P42553	6e-15	S1FA1_ORYSJ; DNA-binding protein S1FA1
Swissprot	Q7XLX6	9e-15	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A1S2XSP9	1e-53	A0A1S2XSP9_CICAR; DNA-binding protein S1FA-like
STRING	XP_004493958.1	2e-54	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5409	33	55

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]