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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
XP_004493764.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family |
LBD |
Protein Properties |
Length: 214aa MW: 24198.3 Da PI: 6.137 |
Description |
LBD family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
XP_004493764.1 | genome | NCBI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF260 | 124.1 | 7.1e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94
+C aCk+lrrkC+++Cv+apyf++e+ + +fa++hk+FGasnv+kll++lp ++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+a+l
XP_004493764.1 7 PCGACKFLRRKCVRGCVFAPYFCHEEgATHFAAIHKVFGASNVSKLLAHLPLTDRFEAALTISYEAQARLQDPIYGCVAHIFSLQQQVVSLQAQL 101
7***********************9989******************************************************************* PP
DUF260 95 allkee 100
a+l+e+
XP_004493764.1 102 AYLREQ 107
**9987 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 214 aa
Download sequence Send
to blast |
MTGCCSPCGA CKFLRRKCVR GCVFAPYFCH EEGATHFAAI HKVFGASNVS KLLAHLPLTD 60 RFEAALTISY EAQARLQDPI YGCVAHIFSL QQQVVSLQAQ LAYLREQAAQ RCISHENPNE 120 KYFGKPAIPP QDLQSWIQME NSNMNSNQFL PNMFSITNLS TTQYYENTTT LMDINPINIG 180 NYENSGTLEE SMSSFSRFDE RCNHSISYYD MESV
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Functional Description ? help
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Source |
Description |
UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
Publications
? help Back to Top |
- Coudert Y,Périn C,Courtois B,Khong NG,Gantet P
Genetic control of root development in rice, the model cereal. Trends Plant Sci., 2010. 15(4): p. 219-26 [PMID:20153971] - Kitomi Y, et al.
The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling. Plant J., 2011. 67(3): p. 472-84 [PMID:21481033] - Coudert Y, et al.
Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice. BMC Genomics, 2011. 12: p. 387 [PMID:21806801]
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