PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004493429.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | bHLH | ||||||||
Protein Properties | Length: 254aa MW: 29177.5 Da PI: 9.9147 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 42.6 | 1.1e-13 | 68 | 120 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 ++ +hn+ Er RR++iNs ++ Lr+llP + + kK+s + ++ +YI +Lq XP_004493429.1 68 KKLNHNASERDRRKKINSLISSLRSLLPGeD---HTKKMSIPVTISRVLKYIPELQ 120 6789*************************55...7777***************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.126 | 67 | 119 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.00E-4 | 68 | 124 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.4E-13 | 68 | 137 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.31E-15 | 68 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.8E-11 | 68 | 120 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.2E-10 | 73 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MVAFCSPQLS YSNMGWLLEE VEAESLLLSH KKNYVSLDYS LPHQFSSQKQ HVEIERTSPS 60 PSPNLVVKKL NHNASERDRR KKINSLISSL RSLLPGEDHT KKMSIPVTIS RVLKYIPELQ 120 KQVEGLIKQK EELLSRISRQ EYKVNKESQK KIPNYNSSFV VSTSRLNDTE LAIHISSYEA 180 HKIPLSEILL CLEDNGLFLL NSSSSKTFGG RLFYNLHFQV TKTQILESDV LIQKLLSIYE 240 KQRSNQFRLG TSVR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004493429.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC125478 | 1e-116 | AC125478.14 Medicago truncatula clone mth2-31i19, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004493429.1 | 0.0 | transcription factor bHLH100 | ||||
TrEMBL | A0A1S2XRJ6 | 0.0 | A0A1S2XRJ6_CICAR; transcription factor bHLH100 | ||||
STRING | XP_004493429.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2402 | 33 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56970.1 | 2e-44 | bHLH family protein |