PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB

Protein Properties

Length: 373aa MW: 41636.1 Da PI: 8.8591

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004493237.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.2	6.6e-17	99	144	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia+++ gR++k+c++rw++ XP_004493237.1 99 RGHWRPVEDAKLKELVAEYGPQNWNLIAEHLE-GRSGKSCRLRWFNQ 144 899***************************.*********996 PP
2	Myb_DNA-binding	56.7	5.4e-18	151	194	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r +++eE+e+l+ a+k++G++ W+ Iar ++ gRt++ +k++w+ XP_004493237.1 151 RRTFSEEEEERLLAAHKMYGNK-WAMIARLFP-GRTDNAVKNHWHV 194 6689****************.*****.*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	17.273	94	145	IPR017930	Myb domain
SMART	SM00717	4.1E-15	98	147	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	3.71E-28	99	192	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-16	99	144	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.2E-26	100	152	IPR009057	Homeodomain-like
CDD	cd00167	5.30E-14	102	143	No hit	No description
PROSITE profile	PS51294	26.623	146	200	IPR017930	Myb domain
SMART	SM00717	2.2E-15	150	198	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-14	151	193	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-20	153	198	IPR009057	Homeodomain-like
CDD	cd00167	1.23E-7	162	193	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 373 aa Download sequence Send to blast
MTSHKFNIGV EGFNGDMGLY PLAPIPSSHL VNSQTHLLTN TVMVPKPEMG LQILRPSTMF 60 QSKEIMGTKE EDLSLKLGDE VEDKNSVSVK IGYSKLCSRG HWRPVEDAKL KELVAEYGPQ 120 NWNLIAEHLE GRSGKSCRLR WFNQLDPRIN RRTFSEEEEE RLLAAHKMYG NKWAMIARLF 180 PGRTDNAVKN HWHVIMARRH REKCSVYRRR KPPAVENLSK GLKLSLLNNA ASDSTISSTI 240 DGNASTSTNL SLTNSSAKLI SPKLFHKLAS DQNHHGFGSL MGQSRESVVA TRDVSFDKYF 300 GDCNKQEQVE KLMVKEVDQS NFSDSNSEVS VSESVATNRS NLSISGESEN VGAAVKINNM 360 LPFIDFLGVG AIQ

Sequence ? help Back to Top

Protein Sequence Length: 373 aa Download sequence Send to blast

MTSHKFNIGV EGFNGDMGLY PLAPIPSSHL VNSQTHLLTN TVMVPKPEMG LQILRPSTMF  60
QSKEIMGTKE EDLSLKLGDE VEDKNSVSVK IGYSKLCSRG HWRPVEDAKL KELVAEYGPQ  120
NWNLIAEHLE GRSGKSCRLR WFNQLDPRIN RRTFSEEEEE RLLAAHKMYG NKWAMIARLF  180
PGRTDNAVKN HWHVIMARRH REKCSVYRRR KPPAVENLSK GLKLSLLNNA ASDSTISSTI  240
DGNASTSTNL SLTNSSAKLI SPKLFHKLAS DQNHHGFGSL MGQSRESVVA TRDVSFDKYF  300
GDCNKQEQVE KLMVKEVDQS NFSDSNSEVS VSESVATNRS NLSISGESEN VGAAVKINNM  360
LPFIDFLGVG AIQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-33	99	199	7	107	B-MYB
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	197	211	RRHREKCSVYRRRKP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004493237.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC157472	1e-119	AC157472.3 Medicago truncatula chromosome 7 clone mth2-41h16, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004493237.1	0.0	transcription factor MYB54 isoform X1
TrEMBL	A0A1S2XR53	0.0	A0A1S2XR53_CICAR; transcription factor MYB54 isoform X1
STRING	XP_004493237.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF230	34	243

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	4e-71	myb domain protein 105