PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492885.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 327aa    MW: 37587.5 Da    PI: 4.642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492885.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.11.8e-09150196455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h ++Er+RR+++ +++  L  ++P +     kK++K  +L +A++Y k+Lq
  XP_004492885.1 150 DHLMAERKRRKELTESIIALSAIIPGL-----KKMDKCYVLNEAINYTKHLQ 196
                     5889***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.129146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-14150211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-14150206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.08E-7151200No hitNo description
PfamPF000103.4E-7151196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.9E-10152201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MEDLLESLSS YMEMEDDELN QNNSSIDDEQ EFLKDIMLEQ PECESYSYIF SNKIQNNNST  60
NVAIINVEGN ATSPTNSILP FDEKSNSSNS IMSLERCVCS PATYLLSFDN SSVEPIIEQM  120
SNKRSHDGVE FEPKVNQATK RVKRESEIQD HLMAERKRRK ELTESIIALS AIIPGLKKMD  180
KCYVLNEAIN YTKHLQQRIK ELENQNIDKR VKDPAIFIWK SQASSNKSTT STYCERNTEL  240
LLEVEARVLE KEVLIKIHCE NQNDIVLKIH ELLEKFNLTI TTSSILPFGA SILVINIFAQ  300
MDEENSMTMD DLVKNLRKHV LEAHDRQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1155160RKRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492885.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492885.10.0transcription factor bHLH18-like isoform X1
TrEMBLA0A1S2XQD20.0A0A1S2XQD2_CICAR; transcription factor bHLH18-like isoform X1
STRINGXP_004492885.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149471112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-31bHLH family protein