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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004492806.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WRKY | ||||||||
Protein Properties | Length: 213aa MW: 24426.7 Da PI: 7.9677 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.1 | 2.1e-29 | 135 | 192 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fp sYYrCt+++C+vkk+v+r ++d+++v++tYeg Hnh+ XP_004492806.1 135 LDDGYRWRKYGQKAVKNTKFP-SYYRCTHHTCNVKKQVQRLSKDTSIVVTTYEGIHNHP 192 59*******************.9***********************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.6E-30 | 122 | 192 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.09E-24 | 129 | 193 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.891 | 130 | 194 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.7E-33 | 135 | 193 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.6E-23 | 136 | 192 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MMENQDLSPN PPPLLQNNNT SIPFFFTNPL ESQDDQGLAI GDIDIWGNFF LGQNNNLLVG 60 DGPKKTLMDV QCTSSNLVIN NNNEIISGSY KHEEEEEEKL MGNKEEKRVK GGRVMKKTTR 120 VPRFAFQTRS VDDILDDGYR WRKYGQKAVK NTKFPSYYRC THHTCNVKKQ VQRLSKDTSI 180 VVTTYEGIHN HPCEKLMETL TPLLKQIQFL ASL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 123 | 191 | 2 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00539 | DAP | Transfer from AT5G41570 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004492806.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT147703 | 1e-121 | BT147703.1 Medicago truncatula clone JCVI-FLMt-5C22 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004492806.1 | 1e-160 | probable WRKY transcription factor 12 isoform X2 | ||||
TrEMBL | A0A1S2XRG7 | 1e-159 | A0A1S2XRG7_CICAR; probable WRKY transcription factor 12 isoform X2 | ||||
STRING | XP_004492805.1 | 1e-152 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41570.1 | 6e-54 | WRKY DNA-binding protein 24 |