PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492611.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 794aa    MW: 87950 Da    PI: 6.381
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492611.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS408.46.6e-1254267812374
            GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      +lLl+cAeavs+++le a+++L ++s+l++p g++ qR+aayf eA++arl++s+ ++y++lp ++ s    +++++a+++f+ +sP++kfsh+
  XP_004492611.1 426 LTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPNTPHS----QKVASAFQVFNGISPFVKFSHF 516
                     579**********************************************************99999985....89999***************** PP

            GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlel 191
                     taNqaI ea+++e+rvHiiD+di+qGlQWp L++ LasRp+gpp +R+Tg+g     s e+le+tg+rL++fA +lg+pfef + va+++ ++++
  XP_004492611.1 517 TANQAIQEAFDREDRVHIIDLDIMQGLQWPGLFHILASRPGGPPYVRLTGLGT----SMETLEATGKRLSDFACKLGLPFEFFP-VAEKVGNVDP 606
                     *****************************************************....***************************.7********* PP

            GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                     ++L+v++ Ea+aV++    h+l+d ++s ++    +L+l+++l Pkvv+vveq+++ n++sFl rf+ea++yysalfdsl  ++++eseer++vE
  XP_004492611.1 607 DKLNVSKSEAVAVHWLQ--HSLYDVTGSDTN----TLWLLQRLAPKVVTVVEQDLS-NAGSFLGRFVEAIHYYSALFDSLGCSYGEESEERHVVE 694
                     ****************9..999999999999....*******************97.699*********************************** PP

            GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     ++ll+rei+nv+a +g +r  + + +++Wre+l+++GF+ ++l  +aa+qa+lll +++s+gy++ e++g l lgWkd  L+++SaWr
  XP_004492611.1 695 QQLLSREIRNVLAVRGPSRSGEIK-FHNWREKLQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWR 781
                     ******************888776.**************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.497399761IPR005202Transcription factor GRAS
PfamPF035142.3E-122426781IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 794 aa     Download sequence    Send to blast
MATCALFNGV RCNNSTTEES NNNNNNSASN SSNLSSEELH TLQHNNMLPH SERKILRKRL  60
ASEMEPQIQV HTPQPHPHNS SSTTTDNNNY HRFSRRTNTS SCLPASTQKG VSTTTTTTLA  120
AGTNNNNNNN TNNYHYHNNN NINTNNNNII SQNSNALTSS RDNNVVGIQN YPTVTLTTNY  180
STMLLPSSNL NNFQLEQQQQ QQQHNPLPSI CGFSGLPLFP SQNQTNNTAN NIVDVVNSSS  240
SSSMEETSAT TTWIDGILKD LIHSSNSVSI PQLINNVREI IYPCNPNLAL VLEHRLRLLT  300
ETTPPKNTER LVLPPNNVST MKHMNPVDTI VPSLHFSDSS PIFPNWVVPQ ITNTLQETSN  360
NNNNPLVTLP SQPSTQQDQE EQQQQQQQQI QDLAAAPTAA DLAQTRKKKE EMKEQKKKDE  420
EGLHLLTLLL QCAEAVSAEN LEDANKMLLE ISQLSTPFGT SAQRVAAYFS EAISARLVSS  480
CLGIYATLPN TPHSQKVASA FQVFNGISPF VKFSHFTANQ AIQEAFDRED RVHIIDLDIM  540
QGLQWPGLFH ILASRPGGPP YVRLTGLGTS METLEATGKR LSDFACKLGL PFEFFPVAEK  600
VGNVDPDKLN VSKSEAVAVH WLQHSLYDVT GSDTNTLWLL QRLAPKVVTV VEQDLSNAGS  660
FLGRFVEAIH YYSALFDSLG CSYGEESEER HVVEQQLLSR EIRNVLAVRG PSRSGEIKFH  720
NWREKLQQCG FRGISLAGNA ATQASLLLGM FPSEGYTLVE DNGILKLGWK DLCLLTASAW  780
RPPFHTNNAI PLHN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A0.04087823380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492611.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0487130.0AB048713.1 Pisum sativum PsSCR mRNA for SCARECROW, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492611.10.0protein SCARECROW
SwissprotQ9AVK40.0SCR_PEA; Protein SCARECROW
TrEMBLA0A1S2XPT00.0A0A1S2XPT0_CICAR; protein SCARECROW
STRINGXP_004492611.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.10.0GRAS family protein