PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492361.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB_related
Protein Properties Length: 601aa    MW: 67816.8 Da    PI: 8.8901
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492361.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37e-08509558147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ + ++     k+Rt  ++k++w ++
   XP_004492361.1 509 RRPFSVLEVEALVQAVEKLGTGRWRDVKQRAFdnaKHRTYVDLKDKWKTL 558
                      567888999**********************99**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542361.54E-6315406IPR029071Ubiquitin-related domain
PROSITE profilePS5129414.75504563IPR017930Myb domain
SMARTSM007171.4E-7508561IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-10509559IPR009057Homeodomain-like
SuperFamilySSF466891.28E-15510591IPR009057Homeodomain-like
CDDcd116602.28E-16510560No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0008301Molecular FunctionDNA binding, bending
GO:0042162Molecular Functiontelomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 601 aa     Download sequence    Send to blast
MVMQKRLNYG FNGYQVPRAS RSPRGRGTIR KKPDSNRIQA FDILASVAGN ILHENASSIP  60
DNVVSVKDHP TFSGINIKDN KQENQLGSLK EEQIEHGTCS EVVSGCVPSL QGKHENQRVT  120
CDSSFHDNHL EGEGQNVLER EDEHVKGRST NEKIIQIQNR SNGLIEPSER ASKDYSSENY  180
VEKPSLEGYD QRNLDSRKLV NIRDDDENFV RCTQMNSKNR ISGTTSDMVL KVKDASPCVN  240
DENDSGDNYV VENSERMYPF KKRKFFYQTS SSTSDSWSQS QGIVDSSYTR VNGTNHNAVI  300
EESSSIADQQ VHHGSKGCNV KLSIKSFKVP ELFIDIPETA TIGSLKRTVM EAVTAILGDE  360
LHVGILLQGK KVRDDNKTLI QTGISQDDKH HRLGFMLEPR HNRTSSSYNE EPCLLTTSTR  420
QKFSRQSTSL MLQQGTYNVS RERSMVKIEN CNEGDLNVVS TIGDTSANNH NMSKCRALVA  480
VPSINMNALA VVPYRRKSGN PDFGQRRIRR PFSVLEVEAL VQAVEKLGTG RWRDVKQRAF  540
DNAKHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLAAHAYWS QQQCKHQIKS  600
L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A1e-544936011109Telomere binding protein TBP1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492361.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492361.10.0telomere repeat-binding protein 6-like
TrEMBLA0A1S2XQE90.0A0A1S2XQE9_CICAR; telomere repeat-binding protein 6-like
STRINGXP_004492361.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF131882124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.14e-93TRF-like 2