PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004492265.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family bHLH
Protein Properties Length: 555aa    MW: 60792 Da    PI: 6.6545
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004492265.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.13.7e-09365412455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_004492265.1 365 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 412
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.15E-10359416No hitNo description
SuperFamilySSF474597.2E-17359430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16361429IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663361411IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.1E-6365412IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10367417IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MENQFFSNNA NVPPQLHFNP PSIPPNWQSI SPTSSMDVQV SILNCVSSQQ HNQDCFYTQT  60
PTWENSTTDH HAVHQFDSAL SSMVSSPAAS NSNMSNDNFA IRELIGKLGN IGGNCNSDNE  120
ISISPHSKTL IASSSYINSN NTSCYNTPLN SPPKLNHSLG KSMAMNSTVA EFSADPGFAE  180
RAAKFSCFGS RSFNGRKNGE LSQSQRSTTP LIENGKLSRV SSSPSLKALG SQIGIQENMN  240
NNSPQLNDQM ELNNSQEEST ISQHVPNVNS RKRKVSSKGK AKETSTSINP SIACEAVEDL  300
NAKRIKQNEG ENNENGQVKA EEESKGGTNS NNGGDDKQNK SNTKPPEAPK DYIHVRARRG  360
QATDSHSLAE RVRREKISER MKLLQDLVPG CNKVTGKALM LDEIINYVQS LQRQVEFLSM  420
KLASVNTRVD FSIESLISKD IFQSNNSLAH PIFPLDSSAP SFYGQQHQQN PAIHNNISNG  480
TVTHNSVDPL DNGLCQNLSM HLASLNGFHE PGSQYPITFS EDDLHTIVQM GFGQTDNNKT  540
PIQFQNLNGS NQLPL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004492265.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004492265.10.0transcription factor bHLH62 isoform X1
TrEMBLA0A1S2XNW60.0A0A1S2XNW6_CICAR; transcription factor bHLH62 isoform X1
STRINGXP_004492265.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-107bHLH family protein