PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491858.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 516aa    MW: 56733 Da    PI: 7.0655
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491858.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.72.4e-33224281260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgse+prsYY+Ct+ +Cpvkkkver+  d++++ei+Y+g+Hnhek
  XP_004491858.1 224 DDGYNWRKYGQKQVKGSEYPRSYYKCTHLNCPVKKKVERAP-DGHITEIIYKGQHNHEK 281
                     8****************************************.***************85 PP
2WRKY107.37.9e-34402460159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++dpk+v++tYeg+Hnh+
  XP_004491858.1 402 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERASTDPKAVITTYEGKHNHD 460
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-29220283IPR003657WRKY domain
SuperFamilySSF1182903.92E-26222282IPR003657WRKY domain
SMARTSM007745.8E-37223281IPR003657WRKY domain
PROSITE profilePS5081123.801224282IPR003657WRKY domain
PfamPF031061.4E-25224280IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.4E-37387462IPR003657WRKY domain
SuperFamilySSF1182901.28E-29394462IPR003657WRKY domain
PROSITE profilePS5081139.192397462IPR003657WRKY domain
SMARTSM007749.6E-40402461IPR003657WRKY domain
PfamPF031061.8E-26403460IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:1900150Biological Processregulation of defense response to fungus
GO:1900425Biological Processnegative regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MSTTNSTDAD TPPQQPPRPT ITLPPRPSVE AFFAGAASPG PMTLVSSFFA TESATFSQLL  60
AGAMASPLAF STAVDSKEDD GTYRFKQSRP MNLVIARSPV FTIPPGLSPS GFLNSPGFFS  120
PQSPFGMSHQ QALAQVTAQA VLAQSHMHMQ PDYQPVSLDY QPVSLEAPTE PPVENPSFTR  180
NETSEVQVVA PISEPRNAQT ETSELSYSDK KQQPSSLPID KPADDGYNWR KYGQKQVKGS  240
EYPRSYYKCT HLNCPVKKKV ERAPDGHITE IIYKGQHNHE KPQANRRIKD NSDVNGNANV  300
QPKSDSNSQG WFANSNKTSE SVPDCSVVES DQTSNQGAPR PLPGLSESEE VGDAGNKEEG  360
DDCEPNPKRR SIEPVVPEVP LSQKTVTEPK IIVQTRSEVD LLDDGYRWRK YGQKVVKGNP  420
HPRSYYKCTS AGCNVRKHVE RASTDPKAVI TTYEGKHNHD VPAARHSSHN TASSNSMPSK  480
PQPVAAEKHP LLKDMEFGNN NQRPVHLRLK EEQIIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-40224463878Probable WRKY transcription factor 4
2lex_A2e-40224463878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004491858.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491858.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-143WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLA0A1S2XN300.0A0A1S2XN30_CICAR; probable WRKY transcription factor 4
STRINGXP_004491858.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-123WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]