PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491750.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 428aa    MW: 48451.7 Da    PI: 9.1527
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491750.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.3e-17190236148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WTt Ed llv++v+++G + W+ Ia++++ gR +kqc++rw ++l
   XP_004491750.1 190 KGQWTTNEDSLLVELVERFGLKKWSQIAKYLN-GRIGKQCRERWCNHL 236
                      799*****************************.*************96 PP
2Myb_DNA-binding569.2e-18242284145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W++eEd+ l++a+k  G++ W+ Ia++++ gRt++++k++w+
   XP_004491750.1 242 KESWSEEEDKTLIEAHKTVGNK-WAEIAKRLP-GRTENSIKNHWN 284
                      578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.063185240IPR017930Myb domain
SuperFamilySSF466893.56E-31187283IPR009057Homeodomain-like
SMARTSM007171.7E-14189238IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-24191240IPR009057Homeodomain-like
CDDcd001671.04E-12193236No hitNo description
PfamPF139214.7E-18193253No hitNo description
SMARTSM007172.4E-17241289IPR001005SANT/Myb domain
PROSITE profilePS5129421.728241291IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-22241289IPR009057Homeodomain-like
CDDcd001675.41E-13244287No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MELDPCFGEK LSMNFPKTPS IKSEMVPSSV VSPPPPPPSH YTTFLYQNHH FKKHHPLNNH  60
PGFATRVPSS SSMISMIPTP SYQRDFVDAR NPMTFEPNME LPTMHGRLNS SKGIWDLSND  120
KNNLFQSQVG VGPTLSAPSL LYGDGAIKPK LQGGDSSCTH GRIGNKPRVN DRGRIQMNSE  180
IQHKDPNKIK GQWTTNEDSL LVELVERFGL KKWSQIAKYL NGRIGKQCRE RWCNHLRPNI  240
KKESWSEEED KTLIEAHKTV GNKWAEIAKR LPGRTENSIK NHWNATKRRQ YAKKRHNRRN  300
SSKGMLLQKY IMEVAAAEEV KKELMKQSMN MMNIGNQPNN ITNANFGEYE SSDQSDFSSD  360
QGWGTNPEDD ELGGGGYVPM MFNDDGMGSG SGGTMSYDQF GSYGMENIIS EVSMKKEIDL  420
MEMIYRNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-441862903107B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004491750.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491750.10.0transcription factor MYB98
TrEMBLA0A1S2XMU30.0A0A1S2XMU3_CICAR; transcription factor MYB98
STRINGXP_004491750.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.14e-57myb domain protein 98