PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004491586.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 549aa    MW: 61831.8 Da    PI: 6.2914
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004491586.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS453.81.1e-1381795491374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++ L+ cA+a++++dl +aq+l+ +l++++s +g+p+qRl ay++e+L arl+ s+s++yk+l+++e +   s+e l+++++++ev+P++kf++
  XP_004491586.1 179 LKHILTVCAKAIADNDLLMAQWLMDELRQMVSVSGEPIQRLGAYMLEGLVARLSASGSSIYKSLRCKEPE---SAELLSYMNILYEVCPYFKFGY 270
                     6799*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     + aN aI ea++ e+rvHiiDf+i qG QW++L+qa+a+Rp+gpp++RiTg+++++s   +   l+ +++rL+k+A++++vpfef++ +a +  d
  XP_004491586.1 271 MSANGAIAEAMKYEQRVHIIDFQIAQGSQWISLIQAFAARPGGPPHIRITGIDDSTSAyaRGGGLHIVEKRLSKLAQHFKVPFEFHA-AAISGCD 364
                     ******************************************************998899999************************.88899** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++l++L v+pgEalaVn++++lh+++desvs++++rd++L+lvkslsPkvv++veqe+++n++ F+ rfle+++yy+a+f+s++++lpre++eri
  XP_004491586.1 365 VQLHNLGVRPGEALAVNFAFMLHHMPDESVSTQNHRDRLLRLVKSLSPKVVTLVEQESNTNTAAFFPRFLETMDYYAAMFESIDVTLPREHKERI 459
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r++vn++aceg er+erhe l+kWr+r+ +aGFkp+pls+ ++ ++k ll++++++ yr++e++g+l+lgW++r Lv+ +aW+
  XP_004491586.1 460 NVEQHCLARDLVNIIACEGVERVERHEVLGKWRSRFAMAGFKPYPLSSLVNGTIKKLLENYSDK-YRLQEKDGALYLGWMNRDLVASCAWK 549
                     **************************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098568.938153530IPR005202Transcription factor GRAS
PfamPF035143.9E-136179549IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009640Biological Processphotomorphogenesis
GO:0005737Cellular Componentcytoplasm
GO:0004871Molecular Functionsignal transducer activity
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MQASEQHRSS SMYYQPLQEI ESYCLPQYRN LNHQMYYNDG GGHGTQFSTQ SSSDLYCTLE  60
SSSAAGSFAV YNSPSTVSFS PNDSPMSQQD SQTQSYPHDQ YHSPDNNIYS SPRSGSCITE  120
DLSSFKHKLR ELENVMLGPD SDYNLVDSYD SAMSNGNDFV SLEMDSWRQT MVAISSKNLK  180
HILTVCAKAI ADNDLLMAQW LMDELRQMVS VSGEPIQRLG AYMLEGLVAR LSASGSSIYK  240
SLRCKEPESA ELLSYMNILY EVCPYFKFGY MSANGAIAEA MKYEQRVHII DFQIAQGSQW  300
ISLIQAFAAR PGGPPHIRIT GIDDSTSAYA RGGGLHIVEK RLSKLAQHFK VPFEFHAAAI  360
SGCDVQLHNL GVRPGEALAV NFAFMLHHMP DESVSTQNHR DRLLRLVKSL SPKVVTLVEQ  420
ESNTNTAAFF PRFLETMDYY AAMFESIDVT LPREHKERIN VEQHCLARDL VNIIACEGVE  480
RVERHEVLGK WRSRFAMAGF KPYPLSSLVN GTIKKLLENY SDKYRLQEKD GALYLGWMNR  540
DLVASCAWK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-5918654825377Protein SCARECROW
5b3h_D1e-5918654825377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in phytochrome A (phyA) signal transduction. {ECO:0000269|PubMed:10817761}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004491586.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9550060.0CR955006.2 Medicago truncatula chromosome 5 clone mth2-5i4, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004491586.10.0scarecrow-like transcription factor PAT1
RefseqXP_004491587.10.0scarecrow-like transcription factor PAT1
SwissprotQ9LDL70.0PAT1_ARATH; Scarecrow-like transcription factor PAT1
TrEMBLA0A1S2XMG00.0A0A1S2XMG0_CICAR; scarecrow-like transcription factor PAT1
STRINGXP_004491586.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16533497
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Heyman J, et al.
    The heterodimeric transcription factor complex ERF115-PAT1 grants regeneration competence.
    Nat Plants, 2016. 2(11): p. 16165
    [PMID:27797356]