PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004491248.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

HB-other

Protein Properties

Length: 546aa MW: 61888.1 Da PI: 6.9166

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004491248.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.2	1.2e-17	21	75	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR t+ ql+ Le+++ +++yp++e ++e+++ lgLte+qV+ WF+ rR k+k+ XP_004491248.1 21 KRKLKTPAQLKGLEKFYTEHKYPTEELKKEISEVLGLTEKQVSGWFCHRRLKDKR 75 79999************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-19	2	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.56E-16	16	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.92	16	76	IPR001356	Homeobox domain
SMART	SM00389	6.1E-17	18	80	IPR001356	Homeobox domain
CDD	cd00086	3.98E-15	21	76	No hit	No description
Pfam	PF00046	3.3E-15	21	75	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence Send to blast
MEESSELQPE ENKVSMEKNA KRKLKTPAQL KGLEKFYTEH KYPTEELKKE ISEVLGLTEK 60 QVSGWFCHRR LKDKRMLKDE ANANGRQDRS SGVIQDRGSG LGQDSCGSSK HGDYRYLDPK 120 EVESHGLYNR DLSVGDMTYG RTNHFSENLS GMDDTSSESS SFLQDRLYRQ GQDPYETDPS 180 RYLTPSKALP PINPKGAINA GYKPSGYLKL KGEIEHAAIT AVKKQLGRNY REDGPLLGVE 240 FDPLPPGAFE FQTEDPVHEP YDIADPTLPN SPEISTVKRR PGLNSRYDSY YTKHSSQDTH 300 MEGVDFGSLH DSDVHDKQDK KAYQGTKHRQ NFQSYGTHFP GRNSSLDLYE DSTGEAAYKS 360 TKNHRMETKR GVEGMRSDSA SNHSDHYEEN RAVKNADFLQ YDNDNINPKN MQRSVHADFL 420 QYDYDNIIPK NAQRSEHVKS KPSNSIRNSR VSLDTEERGL STRMAKEEMF KGNKKAKKQY 480 RDAGGAGMLA NETTVAKRLK ANTFQQYNMK QFPAAEIEPR KNQRSAAEMP SSFSEDETAD 540 TSSSMD

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence Send to blast

MEESSELQPE ENKVSMEKNA KRKLKTPAQL KGLEKFYTEH KYPTEELKKE ISEVLGLTEK  60
QVSGWFCHRR LKDKRMLKDE ANANGRQDRS SGVIQDRGSG LGQDSCGSSK HGDYRYLDPK  120
EVESHGLYNR DLSVGDMTYG RTNHFSENLS GMDDTSSESS SFLQDRLYRQ GQDPYETDPS  180
RYLTPSKALP PINPKGAINA GYKPSGYLKL KGEIEHAAIT AVKKQLGRNY REDGPLLGVE  240
FDPLPPGAFE FQTEDPVHEP YDIADPTLPN SPEISTVKRR PGLNSRYDSY YTKHSSQDTH  300
MEGVDFGSLH DSDVHDKQDK KAYQGTKHRQ NFQSYGTHFP GRNSSLDLYE DSTGEAAYKS  360
TKNHRMETKR GVEGMRSDSA SNHSDHYEEN RAVKNADFLQ YDNDNINPKN MQRSVHADFL  420
QYDYDNIIPK NAQRSEHVKS KPSNSIRNSR VSLDTEERGL STRMAKEEMF KGNKKAKKQY  480
RDAGGAGMLA NETTVAKRLK ANTFQQYNMK QFPAAEIEPR KNQRSAAEMP SSFSEDETAD  540
TSSSMD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004491248.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004491248.1	0.0	homeobox-DDT domain protein RLT2
TrEMBL	A0A1S2XLR6	0.0	A0A1S2XLR6_CICAR; homeobox-DDT domain protein RLT2
STRING	XP_004491248.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5792	30	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	8e-88	HB-other family protein