PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004491031.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 695aa MW: 76668.3 Da PI: 6.8197 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23 | 1.3e-07 | 269 | 289 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd+C +aHg XP_004491031.1 269 PCPEFRK-GSCQKGDSCEYAHG 289 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 1.71E-15 | 24 | 149 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 3.4E-16 | 27 | 171 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 3.30E-12 | 71 | 170 | No hit | No description |
PROSITE profile | PS50297 | 15.3 | 72 | 152 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 1.3E-7 | 72 | 138 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.021 | 72 | 102 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.713 | 107 | 142 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0067 | 107 | 139 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-5 | 264 | 290 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.544 | 264 | 291 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.9E-5 | 269 | 291 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.0E-5 | 269 | 289 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.3E-4 | 296 | 328 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 7.132 | 299 | 323 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 20 | 299 | 322 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 695 aa Download sequence Send to blast |
MCSGSKSKLS SSDYGMENKL QKGIHNSSIL LELSASDDFE AFKREVDEKG LDVNEEGFWY 60 GRRIGSKKMG SEKRTPLMIA SLFGSTEVLK YIILTGKVDV NRVCGSDMAT ALHCAVAGGS 120 EFSLEIVKLL LDAGADADCL DASGNKPVDL IVPAFNYLSK SRRKVLELFL RGGVCDELVL 180 GEMDDPFSLN EGLEKKEKEG GDKKEYPIDI SLPDINNGVY GSDEFRMYSF KVKPCSRAYS 240 HDWTECPFVH PGENARRRDP KKYPYSCVPC PEFRKGSCQK GDSCEYAHGV FESWLHPAQY 300 RTRLCKDETG CNRKVCFFAH KPEELRPVYA STGSAMPSPK SYSASAIDMT SMSPLALSSS 360 SLPMSTVSTP PMSPLAASSS PKSGNLWQNK LNFTPPSLQL SGSRLKSALS ARDMDLEMEL 420 LGLDSPRRQQ QQQQQQQQQL IEEIARISSP SFRSKEFNRI ADLNPTNLDD LLASTDPSLL 480 SQLHGLSMQP STPTQMQSSP SAMQMRQNMN HLRASYPSNM PSSPVRKPSA YGFDSSAAVA 540 AAVMNSRSAA FAKQRSQSFI DRGAATNHHI GMSSPSNPSC RVSSGFSDWN SPTGKLDWGV 600 NGDELSKLRK SASFGFRNNG VAATASPTAH SGHAEPDVSW VNSLVKDVPS ENSEMYGAER 660 MRQQQQQQQQ YDLSREMLPP WMVEQMYIEQ EQMVA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00566 | DAP | Transfer from AT5G58620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004491031.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004491031.1 | 0.0 | zinc finger CCCH domain-containing protein 29 | ||||
Swissprot | Q9LUZ4 | 0.0 | C3H66_ARATH; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A1S2XL92 | 0.0 | A0A1S2XL92_CICAR; zinc finger CCCH domain-containing protein 29 | ||||
STRING | XP_004491031.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1796 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40140.2 | 1e-174 | C3H family protein |