PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490828.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family ARF
Protein Properties Length: 504aa    MW: 55425.7 Da    PI: 7.1044
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490828.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.84.1e-23112211298
                     EEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                     +k+l++sd+++ g +++p+++a++       + ++++ ++l ++d +g++W++++++r++++r+++t+GW+ Fv+ ++L +gD+vvF+  ++s++
  XP_004490828.1 112 VKILSQSDANNGGAFSVPRSCADTVfpklnfEAVPPS-QELFITDVHGEVWKFTHTFRGNPRRHLFTTGWSTFVNKKKLVAGDSVVFM--KNSTG 203
                     5899******************999****99767655.69************************************************..779** PP

                     ..EEEEE- CS
              B3  91 elvvkvfr 98 
                     e +v+++r
  XP_004490828.1 204 EIFVGIRR 211
                     ******97 PP
2Auxin_resp561.7e-19250328176
      Auxin_resp   1 aahaastksvFevvYnPra.stseFvvkvekvekalkvkvsvGmRfkmafete.dsserrl.sGtvvgvsdldpvrWpn 76 
                     aa++a++k++FevvY+P+  ++ +Fvv ++ v +a+k+ +s GmR+k+ +e++ dss+ +l  Gt++ vs++ p r  +
  XP_004490828.1 250 AAESAEKKNAFEVVYYPSDgCWCDFVVDAKVVDEAMKIDWSCGMRVKLCLENDrDSSKMKLiLGTISNVSTATPWRMLQ 328
                     78999************98369*****************************98688888888*********99966555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-32102225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.49E-25107213IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-16111213IPR003340B3 DNA binding domain
PROSITE profilePS5086312.407111213IPR003340B3 DNA binding domain
CDDcd100171.95E-19112211No hitNo description
PfamPF023621.8E-20112211IPR003340B3 DNA binding domain
PfamPF065071.7E-15250331IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MSPTHPRRVH SNILLGCTGA SVKIPKLHSQ VYYFPLGHLH HASPSPTTHT LSILNRHRSI  60
IPCLVSTVDL LADTHSDEVF AKLLLTPVTT FRLQEPQDHS VSDDADKVVS SVKILSQSDA  120
NNGGAFSVPR SCADTVFPKL NFEAVPPSQE LFITDVHGEV WKFTHTFRGN PRRHLFTTGW  180
STFVNKKKLV AGDSVVFMKN STGEIFVGIR RIMKFEATSA AEVSEENKEF EGFLRNGKRG  240
KVTEQAVREA AESAEKKNAF EVVYYPSDGC WCDFVVDAKV VDEAMKIDWS CGMRVKLCLE  300
NDRDSSKMKL ILGTISNVST ATPWRMLQVN WDGAEVSENL KQVSPWQVEV ISQMPALHLA  360
FPPTKKFRAT HNSSGIEGST TIQFLCSTAK SSNRTPLNYD TLDASIKGVR QNLLSVSDKG  420
NSFIGVNSVA GLSIVSTELT LHSSISTNDS SSDTNISIDT KKATSPSIML FGTIIQPVQC  480
DFQDSGIKTS DDEIQDIHKA CTNG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-51934951388Auxin response factor 5
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490828.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490828.10.0auxin response factor 17
TrEMBLA0A1S2XKQ40.0A0A1S2XKQ4_CICAR; Auxin response factor
STRINGXP_004490828.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-109auxin response factor 17