PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004490776.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 624aa MW: 71936.4 Da PI: 5.7145

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004490776.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.4	1.1e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+k++g+++el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratksgyWkatgkd++v XP_004490776.1 6 LPPGFRFHPTDEELVAYYLKRKINGRNIEL-EIIAEVDLYKCEPWDLPgKsLLPGNDMEWYFFSPRDRKYPNGSRTNRATKSGYWKATGKDRKVN 99 79**************************.99***********6434555788********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s + ++vg+kktLv+y+grap+g +t+Wvmheyrl XP_004490776.1 100 S-EAQAVGMKKTLVYYRGRAPHGCRTNWVMHEYRL 133 9.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.71E-65	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.295	6	156	IPR003441	NAC domain
Pfam	PF02365	2.2E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 624 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RNIELEIIAE VDLYKCEPWD LPGKSLLPGN 60 DMEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS EAQAVGMKKT LVYYRGRAPH 120 GCRTNWVMHE YRLHDRECET TSALQDAYAL CRVIKKNTVI VPKVGGQYGN LTTHDNQITT 180 VSQGRGEDLD SSNYLMQINT CSPHNIGNQI SLNRDHGNCS HFSYDDPSFT LPTSSSFTNH 240 GPIAYPPSKV DIALECARMQ HRFTMPPLVV EDFPQGSKTK TDILQEILSH THASQELMNQ 300 SNYSQAYDDN ENYAPCEDDF TFMVGTNYNH INDLNSMSYV DKPWEDLSTR SIEIGDQDEE 360 FKEKRMVENL RWIGMPREDF EKMAEQKVVQ IEDISCFQTI REQNGMQEYD QHNSNLDVNE 420 FSIGFINDGD PNENFIEDGN MDDYSSSPSF YEVIEEIKVS HGLLVSTQQV AMTFFHQVVP 480 SQIVQVQLNP KMIEKNNHSI KNVEAMMMIM ENQGSLFRKF KAYVMGNLIN PSKKIASLVV 540 FLFSLLLMHC VYMEKEVEIW KQNLENVKEK RMRESYEIIK WNESKEVWFV GVKSEKGLSV 600 VLKKIGIFLT MCLALCFMWA SHSN

Sequence ? help Back to Top

Protein Sequence Length: 624 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING RNIELEIIAE VDLYKCEPWD LPGKSLLPGN  60
DMEWYFFSPR DRKYPNGSRT NRATKSGYWK ATGKDRKVNS EAQAVGMKKT LVYYRGRAPH  120
GCRTNWVMHE YRLHDRECET TSALQDAYAL CRVIKKNTVI VPKVGGQYGN LTTHDNQITT  180
VSQGRGEDLD SSNYLMQINT CSPHNIGNQI SLNRDHGNCS HFSYDDPSFT LPTSSSFTNH  240
GPIAYPPSKV DIALECARMQ HRFTMPPLVV EDFPQGSKTK TDILQEILSH THASQELMNQ  300
SNYSQAYDDN ENYAPCEDDF TFMVGTNYNH INDLNSMSYV DKPWEDLSTR SIEIGDQDEE  360
FKEKRMVENL RWIGMPREDF EKMAEQKVVQ IEDISCFQTI REQNGMQEYD QHNSNLDVNE  420
FSIGFINDGD PNENFIEDGN MDDYSSSPSF YEVIEEIKVS HGLLVSTQQV AMTFFHQVVP  480
SQIVQVQLNP KMIEKNNHSI KNVEAMMMIM ENQGSLFRKF KAYVMGNLIN PSKKIASLVV  540
FLFSLLLMHC VYMEKEVEIW KQNLENVKEK RMRESYEIIK WNESKEVWFV GVKSEKGLSV  600
VLKKIGIFLT MCLALCFMWA SHSN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-59	1	158	12	167	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-59	1	158	12	167	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-59	1	158	12	167	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-59	1	158	12	167	NO APICAL MERISTEM PROTEIN
3swm_A	5e-59	1	158	15	170	NAC domain-containing protein 19
3swm_B	5e-59	1	158	15	170	NAC domain-containing protein 19
3swm_C	5e-59	1	158	15	170	NAC domain-containing protein 19
3swm_D	5e-59	1	158	15	170	NAC domain-containing protein 19
3swp_A	5e-59	1	158	15	170	NAC domain-containing protein 19
3swp_B	5e-59	1	158	15	170	NAC domain-containing protein 19
3swp_C	5e-59	1	158	15	170	NAC domain-containing protein 19
3swp_D	5e-59	1	158	15	170	NAC domain-containing protein 19
4dul_A	5e-59	1	158	12	167	NAC domain-containing protein 19
4dul_B	5e-59	1	158	12	167	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004490776.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015036	8e-70	AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004490776.1	0.0	NAC domain-containing protein 86
TrEMBL	A0A1S2XMY6	0.0	A0A1S2XMY6_CICAR; NAC domain-containing protein 86
STRING	XP_004490776.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4421	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-138	NAC domain containing protein 28