PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490716.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family B3
Protein Properties Length: 779aa    MW: 85891.2 Da    PI: 6.6076
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490716.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.41.1e-17322421198
                     EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                     f+kvl+psd+++ grlvlpk +ae++   +++ e++ l + d++g +W++++++  +++s++yvl+ G     ++ +L++gD+v+F++++  +++
  XP_004490716.1 322 FEKVLSPSDAGRIGRLVLPKACAEAFlpHISQSEGVPLEFLDSKGDEWTFQFRFwpNNNSRMYVLE-GVTPCIQSLQLNAGDTVIFSRIDP-GEK 414
                     99***********************9**777778999***************9989999999***9.********************8874.333 PP

                     .EEEEE- CS
              B3  92 lvvkvfr 98 
                     +v+++++
  XP_004490716.1 415 FVLGFRK 421
                     4666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-28318431IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.07E-19320424IPR015300DNA-binding pseudobarrel domain
CDDcd100171.45E-21320421No hitNo description
SMARTSM010199.4E-21322423IPR003340B3 DNA binding domain
PROSITE profilePS5086310.32322423IPR003340B3 DNA binding domain
PfamPF023627.3E-15322421IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MGIEICMNSL CKDGSASEWK KGWLLISGGF ARLCNKCGLA YENSAFCDKF HRHEAGWREC  60
SNCNKPIHCG CIVSRSLFEY LDFGGIGCVT CVKASQLCPD TENPNRSVQS TKNNASGWYA  120
EHIDGRLPME RAGKGNLMQL CRIVEAGESS SWPQAQRNGK VSCIGSSSQE VKCRFSEEDT  180
GFLNVMKHSS HSSKFTLTEN DRPTWESKSI HEPLSLNISL GSSSRNFVPS ATEIVEGRLE  240
GKASSPFQQG KKSHPMLPKQ TKTGVTMNLE TNKGMTSHER IARPPPDGKG KNQLLSRYWP  300
RITDQELEQL SGDLKSTVVP LFEKVLSPSD AGRIGRLVLP KACAEAFLPH ISQSEGVPLE  360
FLDSKGDEWT FQFRFWPNNN SRMYVLEGVT PCIQSLQLNA GDTVIFSRID PGEKFVLGFR  420
KASNSIDTQD ASTSAHSNGI STKNTNFSGA TKNLLSVCSY RDLLQSRKGN GEPYLNGHLE  480
HLRLGTGTSD WLQTARCEEG TNKDPLQPPG SVSEKKRTHN IGPKTKRLLI PSEDAKELRL  540
TWEEAQDLLC PPPSVKPNIV TIEDQVFEEY DEPPVFGKIT ITNAGPSGSS DSASEQLENL  600
LRTRKDSKKR KIVEKGKTIQ EHKPSGLEAL ANAAVLGDNL ADPDESSSAE VTTKHPRHRP  660
GCTCIVCIQP ASGQGRHPPT CTCLACETVK RRFKTLMMRR KKQQSEPEAV DDQIDHMEEA  720
DTNGDASRED ASHSPDEVSV NGGQLEASEP SGAGQIDLNC HPNHEDMEMD TYNRTEHES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A1e-613004292131B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1514518KKRTH
2689701KRRFKTLMMRRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490716.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490716.10.0B3 domain-containing protein Os07g0679700-like
TrEMBLA0A1S2XKI90.0A0A1S2XKI9_CICAR; B3 domain-containing protein Os07g0679700-like
STRINGXP_004490716.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15634911
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30470.10.0high-level expression of sugar-inducible gene 2