PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490690.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 712aa    MW: 83264.4 Da    PI: 8.8041
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490690.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1644.2e-2024110190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +f+ +Y+ ++GF vrk++ +k+k+++ i + +fvCskeg r+ +k++ +  + +raetrt+Cka++ +  + +g++++++++++HnH+l+
  XP_004490690.1  24 QFWLTYSVHAGFGVRKRYANKNKDDT-ISSCRFVCSKEGVRKIDKRD-VFVNIHRAETRTDCKARISLVCK-NGNFVIHEFVEDHNHPLQ 110
                     69*******************96555.*****************999.99999***************999.9***************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1624110IPR004330FAR1 DNA binding domain
PfamPF105513.0E-15250303IPR018289MULE transposase domain
PROSITE profilePS5096610.237490526IPR007527Zinc finger, SWIM-type
SMARTSM005754.8E-7501528IPR006564Zinc finger, PMZ-type
PfamPF044345.8E-6501524IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MSSSNVDWKP RVGMKFDNID VAYQFWLTYS VHAGFGVRKR YANKNKDDTI SSCRFVCSKE  60
GVRKIDKRDV FVNIHRAETR TDCKARISLV CKNGNFVIHE FVEDHNHPLQ LPETTHMLAS  120
HRKITEVQAY EIDLADDSGL RQKSTFQLMS THAGNRANLG FTRLDVKNYL SARRQRSMMY  180
GDVGCLSQYF QRQLLENPSF FHAYQMDIEE QITNVFWCDA NMVLDYGYFG DVVSLDTTYC  240
TNHVNRPLTI ESFKWLFDTF LQAHNHKKPK TVFTDQDQAM ARALAKVMPE THHGLCTWHL  300
LQNEIKHLGN LMKGGSYLLR DFKKCMYDID VEADFETAWT NLINQYDVHE NNWIKSVYAI  360
KKKWAACYMK EAFTLGMRST QLSESLNAHF KSGMKPNVDI IQFFKHFERV VEEKRSNELS  420
YEYESSHKLA RLRYELSPIL IQMRYVYTHV VFELFQNEFK LFLALSILER NESHSLCEYV  480
ITMVNHEGFW RVSFDRASTS ITCSCRKFET FGILCSHVLK VFEANDVKVI PEKYILRRWT  540
REARCGIVHD FRGKEVEGDP KLSRTRKFRQ VVSKFIRVAA EASPCEEHLK IVDNYVDVMC  600
KKIKECRLQV IDNEINENPT FVSNNVMQPT GFKKRPNLKR HMHKRPKSFI EKKKAPSRRK  660
KAQDKLGESH MLDEVSCSAP PTYEPPQTQK DQFSFTTLLI APLDETNVPT LY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490690.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004490690.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A1S2XKF40.0A0A1S2XKF4_CICAR; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_004490690.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-91FAR1-related sequence 5