PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004490677.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WRKY | ||||||||
Protein Properties | Length: 239aa MW: 27753.5 Da PI: 8.4185 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74.1 | 1.7e-23 | 129 | 185 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynW+KY K kgse+ rsYY+C ++C vkkkver+ d++++e+ Y+g+Hnh XP_004490677.1 129 DDGYNWKKYEEKLEKGSENQRSYYKCNWPNCAVKKKVERNI-DGEIIETQYKGTHNHY 185 8****************************************.***************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.0E-21 | 122 | 187 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-19 | 125 | 187 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.6E-21 | 128 | 186 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.4E-18 | 129 | 184 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.164 | 129 | 187 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005794 | Cellular Component | Golgi apparatus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence Send to blast |
MPIRISNRVI IIQKKQWRIL GFFSSIIGLI SYALSSSFIH LFGEWNFIKI IIYAMINLML 60 SIVAAIFCYS LMVLRSKFES RPAIGNLRME DDVAIEIFDA EDNNNRNELK NYSNGNQKNE 120 SLRRRVHDDD GYNWKKYEEK LEKGSENQRS YYKCNWPNCA VKKKVERNID GEIIETQYKG 180 THNHYKPKSA MKRNSSSEFV YSLLQSKTFH TDLPDQLLAS QGNEQLDSDA EPESSSVSI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 5e-15 | 129 | 187 | 18 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 5e-15 | 129 | 187 | 18 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004490677.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135161 | 3e-33 | AC135161.14 Medicago truncatula clone mth2-30k24, complete sequence. | |||
GenBank | AC138012 | 3e-33 | AC138012.32 Medicago truncatula clone mth2-9b15, complete sequence. | |||
GenBank | CR932960 | 3e-33 | CR932960.3 Medicago truncatula chromosome 5 clone mth4-7a5, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004490677.1 | 1e-178 | probable WRKY transcription factor 33 isoform X2 | ||||
TrEMBL | A0A1S2XMR4 | 1e-176 | A0A1S2XMR4_CICAR; probable WRKY transcription factor 33 isoform X2 | ||||
STRING | XP_004490676.1 | 1e-133 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38470.1 | 3e-24 | WRKY DNA-binding protein 33 |