PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004490520.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 349aa    MW: 39065.5 Da    PI: 7.0192
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004490520.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.65.1e-28185245259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqKe+ g ++prsYYrCt++    Cp+kk+v+r +e+p++ve+tY+g+H ++
  XP_004490520.1 185 EDGFTWRKYGQKEILGRKYPRSYYRCTHQklyLCPAKKQVQRVDENPNIVEVTYRGDHICH 245
                     7****************************8888*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-27179245IPR003657WRKY domain
SuperFamilySSF1182907.19E-24182245IPR003657WRKY domain
SMARTSM007741.6E-34184246IPR003657WRKY domain
PfamPF031064.4E-25185245IPR003657WRKY domain
PROSITE profilePS5081120.151185242IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MEEVLNFIMH AIESSKKLEL ELPNIINHLE ILFSSIDEVE KSFGGAKERV MMLLSSQHDI  60
TKTTLSNSFA SMMSHDVFMN KTQHAQIDRL LDLMQNPFDM SHVLLENKMI SGGDIPMLRS  120
KGTLKIGEMV GRNVEGLEKS KGLEGEMQGI QTPPSRPKKS RKIDLEKRTV MVPAPQVGNT  180
DMPPEDGFTW RKYGQKEILG RKYPRSYYRC THQKLYLCPA KKQVQRVDEN PNIVEVTYRG  240
DHICHKSLTA PLSYPPPQQL LVNINNTQTT ISPQLSPSSN SRWPQAANLG LRAGDASGSG  300
GPSTTRYGID YPVADMADTM FNSGSSSGNS MESLFAPMDD KWELDENKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-19185244968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004490520.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0097496e-60CT009749.1 Medicago truncatula chromosome 5 clone mth2-46e3, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027188015.10.0WRKY transcription factor 55
TrEMBLA0A3Q7YD540.0A0A3Q7YD54_CICAR; WRKY transcription factor 55
STRINGXP_004490520.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.16e-47WRKY DNA-binding protein 55