PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

GATA

Protein Properties

Length: 300aa MW: 32245.6 Da PI: 6.5

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004490456.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	50.4	3.1e-16	211	246	1	34
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkg 34 C++Cg ++ Tp++Rrgp+g+++LCnaCGl+++ +g XP_004490456.1 211 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANRG 246 ***99999********************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	7.2E-11	74	109	IPR010399	Tify domain
PROSITE profile	PS51320	14.883	74	109	IPR010399	Tify domain
Pfam	PF06200	1.5E-12	78	108	IPR010399	Tify domain
Pfam	PF06203	6.4E-15	143	185	IPR010402	CCT domain
PROSITE profile	PS51017	12.411	143	185	IPR010402	CCT domain
SMART	SM00401	1.8E-14	205	258	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	8.08E-12	209	262	No hit	No description
CDD	cd00202	4.63E-14	210	254	No hit	No description
Gene3D	G3DSA:3.30.50.10	1.8E-15	210	252	IPR013088	Zinc finger, NHR/GATA-type
Pfam	PF00320	6.0E-14	211	246	IPR000679	Zinc finger, GATA-type
PROSITE pattern	PS00344	0	211	238	IPR000679	Zinc finger, GATA-type
PROSITE profile	PS50114	9.816	211	264	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MEPSIYGHSH PLNITAESDD GSGPDNTIEG HHHIQYETHG LNDGGVGGGV VVDEGTSDAV 60 YGHGGGNSEL ALQSFDDSSQ LTLSFRGQVY VFDSVTPDKV QSVLLLLGGC ELPQAGTTCV 120 DAVPQQSQRG STEFPTKCSL PQRAASLIRF RQKRKERCFE KKVRYGVRQE VALRMHRNKG 180 QFTSSKKQDG ANSCGTDQDS GQDDSQSVTF CTHCGISSKS TPMMRRGPSG PRSLCNACGL 240 FWANRGALRD LSKRHPELSI VPAEHVDQGN GSDCGTAIIP AHNNLAAFSE NDNQALVADR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004490456.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004490456.1	0.0	GATA transcription factor 25-like
Swissprot	Q9LRH6	1e-85	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A1S2XJV4	0.0	A0A1S2XJV4_CICAR; GATA transcription factor 25-like
STRING	XP_004490456.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	6e-81	GATA-type zinc finger protein with TIFY domain

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]