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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004489898.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 418aa MW: 47846.5 Da PI: 5.3519 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 27.2 | 5e-09 | 71 | 116 | 1 | 46 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkl 46 k i+n+ r++tf +R++g+ K + S+ +a++++i++ +g++ XP_004489898.2 71 KYINNEKVRKITFMNRKKGLTNKVSDFSTKSGAKACLIMYDGDGNV 116 5799************************************999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.241 | 63 | 123 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.4E-9 | 63 | 122 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.4E-15 | 63 | 138 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 2.32E-14 | 64 | 136 | No hit | No description |
Pfam | PF00319 | 2.5E-10 | 73 | 116 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MATVLLEFVA AFAATKGNGY KRLWRPGRPQ MATSLWDFVV AWAATNGNVT LGFCGGLCSH 60 KRMGRAKVAI KYINNEKVRK ITFMNRKKGL TNKVSDFSTK SGAKACLIMY DGDGNVAPTI 120 WPENPTLVNS MLQEYENQKI EASPKIFDIK NYFKIKKEIV EAEILKVKKA ILRNKFPTWD 180 PSFNNMQVEH LTAFMEAINA KVQDCNERIN MMKNIQEIET NFLHNTSHMQ NMVPESLDSS 240 NSSQINVIQS IPQMEQYIHD PMELPLDDVY EMVNFTNHVD LPPNSSTNQL CQLVECDNLE 300 VKPINVCQLV ECDDLEVKPI NERGNQFADV DDWTNQLDDD IWNWIRQPDQ FSWNDISFLP 360 PSEHESAMGS RGRDDKIIRV TCDADTFTSS MMNPPKMIQP TTSRKKRRMI IEDDDKGE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004489898.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004489898.2 | 0.0 | uncharacterized protein LOC101495285 | ||||
TrEMBL | A0A1S2XIJ9 | 0.0 | A0A1S2XIJ9_CICAR; uncharacterized protein LOC101495285 | ||||
STRING | XP_004489898.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G55690.1 | 4e-18 | M-type_MADS family protein |