PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004489825.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

YABBY

Protein Properties

Length: 215aa MW: 24151.3 Da PI: 4.9562

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004489825.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	197.4	6.1e-61	6	162	2	166
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesa 92 ++f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCtsllsvn++kas +lla+ hl+ ++ ++ee+ ++ +++sa XP_004489825.1 6 HLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASfvpfHLLASLTHLEP--------KESSQEEDANKC-LNSNSA 91 7899********************************************999666677777777432........222333332222.222233 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166 s + s + +ed+ +p v++PPekrqr Psaynrfik+ei+r+ka+nPd++h+eafs+aaknWa P+ XP_004489825.1 92 SMMTYS---DCEEDDVIPISNVVNKPPEKRQRTPSAYNRFIKDEIKRLKAQNPDMAHKEAFSTAAKNWANCPPT 162 322222...4567888888888**********************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.5E-62	11	163	IPR006780	YABBY protein
SuperFamily	SSF47095	1.44E-9	109	162	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.2E-6	112	163	IPR009071	High mobility group box domain
CDD	cd01390	2.12E-5	120	163	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MSTLNHLFDL PEQICYVQCG FCTTILMVSV PCSSLSMVVT VRCGHCTSLL SVNMMKASFV 60 PFHLLASLTH LEPKESSQEE DANKCLNSNS ASMMTYSDCE EDDVIPISNV VNKPPEKRQR 120 TPSAYNRFIK DEIKRLKAQN PDMAHKEAFS TAAKNWANCP PTQCKGDEEN CSQTDQLVDL 180 DSQVDPHDVE VNEEEQGFRG RKVARNSILE RTPFQ

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004489825.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT025841	9e-55	CT025841.2 Medicago truncatula chromosome 5 clone mth2-131j21, COMPLETE SEQUENCE.
GenBank	CT573503	9e-55	CT573503.1 Medicago truncatula chromosome 5 clone mth2-117h16, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004489825.1	1e-161	axial regulator YABBY 4
Swissprot	Q9LDT3	6e-72	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	A0A1S2XID7	1e-160	A0A1S2XID7_CICAR; axial regulator YABBY 4
STRING	XP_004489825.1	1e-161	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	2e-74	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]