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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
XP_004489825.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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| Family |
YABBY |
| Protein Properties |
Length: 215aa MW: 24151.3 Da PI: 4.9562 |
| Description |
YABBY family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| XP_004489825.1 | genome | NCBI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | YABBY | 197.4 | 6.1e-61 | 6 | 162 | 2 | 166 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekeesa 92
++f+ +eq+CyvqC+fC+til+vsvP +sl++vvtvrCGhCtsllsvn++kas +lla+ hl+ ++ ++ee+ ++ +++sa
XP_004489825.1 6 HLFDLPEQICYVQCGFCTTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASfvpfHLLASLTHLEP--------KESSQEEDANKC-LNSNSA 91
7899**********************************************999666677777777432........222333332222.222233 PP
YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPki 166
s + s + +ed+ +p v++PPekrqr Psaynrfik+ei+r+ka+nPd++h+eafs+aaknWa P+
XP_004489825.1 92 SMMTYS---DCEEDDVIPISNVVNKPPEKRQRTPSAYNRFIKDEIKRLKAQNPDMAHKEAFSTAAKNWANCPPT 162
322222...4567888888888************************************************9975 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 215 aa
Download sequence Send
to blast |
MSTLNHLFDL PEQICYVQCG FCTTILMVSV PCSSLSMVVT VRCGHCTSLL SVNMMKASFV 60
PFHLLASLTH LEPKESSQEE DANKCLNSNS ASMMTYSDCE EDDVIPISNV VNKPPEKRQR 120
TPSAYNRFIK DEIKRLKAQN PDMAHKEAFS TAAKNWANCP PTQCKGDEEN CSQTDQLVDL 180
DSQVDPHDVE VNEEEQGFRG RKVARNSILE RTPFQ
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| Functional Description ? help
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| Source |
Description |
| UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | CT025841 | 9e-55 | CT025841.2 Medicago truncatula chromosome 5 clone mth2-131j21, COMPLETE SEQUENCE. |
| GenBank | CT573503 | 9e-55 | CT573503.1 Medicago truncatula chromosome 5 clone mth2-117h16, COMPLETE SEQUENCE. |
| Publications
? help Back to Top |
- Lora J,Hormaza JI,Herrero M
Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT).
New Phytol., 2015. 208(2): p. 584-95
[PMID:25991552] - Skinner DJ,Brown RH,Kuzoff RK,Gasser CS
Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function.
BMC Plant Biol., 2016. 16(1): p. 143
[PMID:27350128] - Simon MK,Skinner DJ,Gallagher TL,Gasser CS
Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors.
Genetics, 2017. 207(4): p. 1489-1500
[PMID:28971961]
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