PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_004489760.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 215aa MW: 24603.9 Da PI: 10.9315

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004489760.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.4	9.1e-12	54	100	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+E+rRR riN +e+Lr++lP++ K +Ka+iL ++++ +k+L XP_004489760.1 54 KKHSEAEKRRRMRINGQYETLRSILPNL-----IKKDKASILVETIKQVKEL 100 68***********************9.....699********999988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.653	51	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.2E-9	54	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.96E-8	54	103	No hit	No description
SuperFamily	SSF47459	3.79E-13	54	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.3E-12	55	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.1E-8	57	106	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF55021	4.58E-7	140	207	No hit	No description
Gene3D	G3DSA:3.30.70.260	3.9E-7	141	203	No hit	No description
CDD	cd04873	2.31E-5	142	190	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MVLLRQGMQH VRNYYNSEAQ MIRSNFPRPF ISQTYKSSFT KQKSKVENKL LAAKKHSEAE 60 KRRRMRINGQ YETLRSILPN LIKKDKASIL VETIKQVKEL KKKASNLEEQ NRGTLKEVKF 120 PSGGDRLNLE KCNDEEGLVK ATLSCEDRPG LMSSIARAIG SMKAKVVKTE MVTVGGRTKT 180 VLWVQGIENE SMGMLKSTLK VVMHKPSFKM RRFPQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004489760.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR931728	7e-71	CR931728.1 Medicago truncatula chromosome 5 clone mth2-175g3, COMPLETE SEQUENCE.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004489760.1	1e-158	transcription factor bHLH131
TrEMBL	A0A1S2XKR4	1e-157	A0A1S2XKR4_CICAR; transcription factor bHLH131
STRING	XP_004489760.1	1e-157	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF12611	30	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38070.1	2e-45	bHLH family protein