PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489664.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family MYB
Protein Properties Length: 374aa    MW: 41610.8 Da    PI: 8.1515
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489664.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.4e-15109154147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v +lG+ +W+ Ia+++  gR++k+c++rw + 
   XP_004489664.1 109 RGHWRPNEDAKLIEVVGKLGPQNWNNIAQHLH-GRSGKSCRLRWCNQ 154
                      899*****************************.***********985 PP
2Myb_DNA-binding56.37.3e-18161205147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg +++eE+e+l+ a+k +G++ W++I + ++ gRt++ +k++w+ +
   XP_004489664.1 161 RGVFSEEEEEKLLAAHKIYGNK-WALICKLFP-GRTDNAVKNHWHVL 205
                      899*******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.687104155IPR017930Myb domain
SuperFamilySSF466896.74E-28108202IPR009057Homeodomain-like
SMARTSM007178.8E-12108157IPR001005SANT/Myb domain
PfamPF002492.9E-15109154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-25110162IPR009057Homeodomain-like
CDDcd001677.84E-11112153No hitNo description
PROSITE profilePS5129426.71156210IPR017930Myb domain
SMARTSM007173.5E-16160208IPR001005SANT/Myb domain
PfamPF002492.7E-15161205IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.8E-21163210IPR009057Homeodomain-like
CDDcd001678.98E-8171206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MSSLNLNIDN GFSLDLKVSP SSHVPSSSNT SLMGHANETE SEKTEIPFEI LNPLVINPKE  60
KMITNKQGDE GYFGNEKNNL PLNVGEEENE AKNSSLAIEK IGNTKLSIRG HWRPNEDAKL  120
IEVVGKLGPQ NWNNIAQHLH GRSGKSCRLR WCNQLDPKLN RGVFSEEEEE KLLAAHKIYG  180
NKWALICKLF PGRTDNAVKN HWHVLMARRL RNQSSTSSKM KKSTFQISSN ILMNMNLTNY  240
NVASESTISS TIDESNSTCT NLNLITMPNF HNNHALPNFQ TYGSQIGLLG ERNVAARDNG  300
FDKFFSASTK GSCDCHMGKL KIMDKSNYSD SISEVSISQS VATNKTNVSI LGESENVKDK  360
IKRSFIDFLG VGET
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-321082106108B-MYB
1mse_C7e-321082103105C-Myb DNA-Binding Domain
1msf_C7e-321082103105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489664.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489664.10.0transcription factor MYB56-like
TrEMBLA0A1S2XKK40.0A0A1S2XKK4_CICAR; transcription factor MYB56-like
STRINGXP_004489664.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17800.11e-53myb domain protein 56