PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489663.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 692aa    MW: 78497.8 Da    PI: 7.9139
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489663.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox45.41.4e-142777656
                    S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    ++++ q++ Le++ e++++p++++r++ A+++gL+ +q+++WFqN+R+  k
  XP_004489663.1 27 RLSRIQTTMLEKFMEECPHPDEAQRTQFAEQVGLEPKQIRFWFQNKRTLLK 77
                    67889******************************************8665 PP

2START115.19.8e-372114334206
                     HHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   4 eeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                       a++el++++  +ep+Wv ss+ ++ + +l  ++ ++v              ea++ s++v    + lv ++ld   +W + ++    k+et++
  XP_004489663.1 211 TIAMEELIRLVRMNEPFWVNSSTTQDAKLTLIHEAYEQVfpkkshfkgpnIVKEASKYSAMVNLSGMILVDIFLDPV-KWAKLFPtmvkKCETIK 304
                     5689******************44444444444444444566667899988889*************9999999998.88777777777****** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v ++g        lqlm+ ++  lsplv  R+f ++Ry++q g g+w+i+ vS ds q++++  +   a ++pSg++i++++ng + vtwvehv+
  XP_004489663.1 305 VFETGvlengdISLQLMYEKMHILSPLVRpREFNIIRYCKQIGVGTWMIANVSYDSSQPNTN--HHSHAWKYPSGCMIRQLPNGTCVVTWVEHVE 397
                     *********99999************9866******************************97..4445678************************ PP

                     --SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                     +++ +  h l++ l+++    ga  w + lqr cek
  XP_004489663.1 398 VNDEIHtHHLYKDLIGTHNLYGAESWIKELQRMCEK 433
                     ***9998***************************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.5E-14881IPR009057Homeodomain-like
SuperFamilySSF466896.42E-151684IPR009057Homeodomain-like
PROSITE profilePS5007114.8191979IPR001356Homeobox domain
SMARTSM003896.9E-112183IPR001356Homeobox domain
CDDcd000861.02E-122280No hitNo description
PfamPF000464.2E-122677IPR001356Homeobox domain
PROSITE patternPS0002705477IPR017970Homeobox, conserved site
PROSITE profilePS5084838.129199436IPR002913START domain
SuperFamilySSF559618.57E-27200433No hitNo description
CDDcd088754.74E-82203432No hitNo description
SMARTSM002343.0E-15208433IPR002913START domain
PfamPF018525.6E-31211433IPR002913START domain
Gene3DG3DSA:3.30.530.202.9E-11264402IPR023393START-like domain
SuperFamilySSF559612.86E-11456630No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MVYPNKGAST AEAAENSNNG ERSAHKRLSR IQTTMLEKFM EECPHPDEAQ RTQFAEQVGL  60
EPKQIRFWFQ NKRTLLKNQE KRVSNSALRN ENDMLQNENN LINEALKSTI CSTCGGPPFP  120
QKEHELFMKK MGEENDQLKQ EIEKVSTLIS RYKRKEISLP ELELSLAHVK TFSHSQMVSG  180
SSSHSHNHSI RVNQPMQNCD VEKSMITQIA TIAMEELIRL VRMNEPFWVN SSTTQDAKLT  240
LIHEAYEQVF PKKSHFKGPN IVKEASKYSA MVNLSGMILV DIFLDPVKWA KLFPTMVKKC  300
ETIKVFETGV LENGDISLQL MYEKMHILSP LVRPREFNII RYCKQIGVGT WMIANVSYDS  360
SQPNTNHHSH AWKYPSGCMI RQLPNGTCVV TWVEHVEVND EIHTHHLYKD LIGTHNLYGA  420
ESWIKELQRM CEKTYSFFLP RIPDHESGGV IETIEGRKSV MRLSHRMVRM FCECLTTQSN  480
VEFPSTIQDS IGGIRVSFQD ITSSGQPNGK GVVAIATLWT PLPSDKVFEF LIDPTKRSKW  540
DVLAYGNRVH EIAHISNGYH HGNFISLLKP FIPSEKNVLI LQENFTSHVG SYVIFAGIDI  600
ASMNVAIRGE DTVKMHILPS GFVVCPNDQK SNATNSEGFK GGSLLTLAYE ILSCSSERTT  660
NLTNVESAAN ARTLLTTTLE NVKKALMNYN RR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489663.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027187843.10.0homeobox-leucine zipper protein HDG11-like
TrEMBLA0A3Q7XM570.0A0A3Q7XM57_CICAR; homeobox-leucine zipper protein HDG11-like
STRINGXP_004489663.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10263398
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.11e-156homeodomain GLABROUS 11