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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004489663.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 692aa MW: 78497.8 Da PI: 7.9139 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 45.4 | 1.4e-14 | 27 | 77 | 6 | 56 |
S--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++ q++ Le++ e++++p++++r++ A+++gL+ +q+++WFqN+R+ k XP_004489663.1 27 RLSRIQTTMLEKFMEECPHPDEAQRTQFAEQVGLEPKQIRFWFQNKRTLLK 77 67889******************************************8665 PP | |||||||
2 | START | 115.1 | 9.8e-37 | 211 | 433 | 4 | 206 |
HHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 4 eeaaqelvkkalaeepgWvkssesengdevlqkfeeskv...........dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 a++el++++ +ep+Wv ss+ ++ + +l ++ ++v ea++ s++v + lv ++ld +W + ++ k+et++ XP_004489663.1 211 TIAMEELIRLVRMNEPFWVNSSTTQDAKLTLIHEAYEQVfpkkshfkgpnIVKEASKYSAMVNLSGMILVDIFLDPV-KWAKLFPtmvkKCETIK 304 5689******************44444444444444444566667899988889*************9999999998.88777777777****** PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171 v ++g lqlm+ ++ lsplv R+f ++Ry++q g g+w+i+ vS ds q++++ + a ++pSg++i++++ng + vtwvehv+ XP_004489663.1 305 VFETGvlengdISLQLMYEKMHILSPLVRpREFNIIRYCKQIGVGTWMIANVSYDSSQPNTN--HHSHAWKYPSGCMIRQLPNGTCVVTWVEHVE 397 *********99999************9866******************************97..4445678************************ PP --SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 172 lkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 +++ + h l++ l+++ ga w + lqr cek XP_004489663.1 398 VNDEIHtHHLYKDLIGTHNLYGAESWIKELQRMCEK 433 ***9998***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.5E-14 | 8 | 81 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.42E-15 | 16 | 84 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.819 | 19 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.9E-11 | 21 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.02E-12 | 22 | 80 | No hit | No description |
Pfam | PF00046 | 4.2E-12 | 26 | 77 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 54 | 77 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 38.129 | 199 | 436 | IPR002913 | START domain |
SuperFamily | SSF55961 | 8.57E-27 | 200 | 433 | No hit | No description |
CDD | cd08875 | 4.74E-82 | 203 | 432 | No hit | No description |
SMART | SM00234 | 3.0E-15 | 208 | 433 | IPR002913 | START domain |
Pfam | PF01852 | 5.6E-31 | 211 | 433 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.9E-11 | 264 | 402 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.86E-11 | 456 | 630 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MVYPNKGAST AEAAENSNNG ERSAHKRLSR IQTTMLEKFM EECPHPDEAQ RTQFAEQVGL 60 EPKQIRFWFQ NKRTLLKNQE KRVSNSALRN ENDMLQNENN LINEALKSTI CSTCGGPPFP 120 QKEHELFMKK MGEENDQLKQ EIEKVSTLIS RYKRKEISLP ELELSLAHVK TFSHSQMVSG 180 SSSHSHNHSI RVNQPMQNCD VEKSMITQIA TIAMEELIRL VRMNEPFWVN SSTTQDAKLT 240 LIHEAYEQVF PKKSHFKGPN IVKEASKYSA MVNLSGMILV DIFLDPVKWA KLFPTMVKKC 300 ETIKVFETGV LENGDISLQL MYEKMHILSP LVRPREFNII RYCKQIGVGT WMIANVSYDS 360 SQPNTNHHSH AWKYPSGCMI RQLPNGTCVV TWVEHVEVND EIHTHHLYKD LIGTHNLYGA 420 ESWIKELQRM CEKTYSFFLP RIPDHESGGV IETIEGRKSV MRLSHRMVRM FCECLTTQSN 480 VEFPSTIQDS IGGIRVSFQD ITSSGQPNGK GVVAIATLWT PLPSDKVFEF LIDPTKRSKW 540 DVLAYGNRVH EIAHISNGYH HGNFISLLKP FIPSEKNVLI LQENFTSHVG SYVIFAGIDI 600 ASMNVAIRGE DTVKMHILPS GFVVCPNDQK SNATNSEGFK GGSLLTLAYE ILSCSSERTT 660 NLTNVESAAN ARTLLTTTLE NVKKALMNYN RR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004489663.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027187843.1 | 0.0 | homeobox-leucine zipper protein HDG11-like | ||||
TrEMBL | A0A3Q7XM57 | 0.0 | A0A3Q7XM57_CICAR; homeobox-leucine zipper protein HDG11-like | ||||
STRING | XP_004489663.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 1e-156 | homeodomain GLABROUS 11 |