PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004489492.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NAC | ||||||||
Protein Properties | Length: 390aa MW: 44749.1 Da PI: 7.8956 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.1 | 2.1e-50 | 18 | 150 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknr.atk.....sgyWkatgkd 89 pGfrF+Ptd+el+ +yLkkk+++k+l++ e ik+vdiy++ePwdLpk + +++ekewyf+++r++ky++++r+nr +t+ gyWkatg+d XP_004489492.1 18 LPGFRFRPTDQELIGFYLKKKIQQKSLPI-ELIKQVDIYNYEPWDLPKlASTSSEKEWYFYCPRERKYKNSSRPNRvITRnngksIGYWKATGTD 111 69***************************.89***************535566889********************5444555558********* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+++s++g+ +glkk+Lvfykgra++g+ktdW+mhe+rl XP_004489492.1 112 KAIYSSDGKCIGLKKSLVFYKGRASNGNKTDWMMHEFRL 150 *************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 8.5E-53 | 16 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 53.391 | 17 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-24 | 19 | 150 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 390 aa Download sequence Send to blast |
MEERSKMDNY DEVDDVILPG FRFRPTDQEL IGFYLKKKIQ QKSLPIELIK QVDIYNYEPW 60 DLPKLASTSS EKEWYFYCPR ERKYKNSSRP NRVITRNNGK SIGYWKATGT DKAIYSSDGK 120 CIGLKKSLVF YKGRASNGNK TDWMMHEFRL PCISNSTSPK KLFDKSFSPN DSWAICKIFE 180 KPTSSSMVQK ALSHPWISQL PGGRVSELLT QTSNTNQLCS QSNISLSTKT EQESSTIKFC 240 SNNTNNFSPS YFPNYTISKS SQIPNGDNVV HNNIMLYNTT EATDSTKCPI DTSSIISNTN 300 YIGLEDANNQ YSNFSINLPK DIQPNIGTEL EEQDWKKNPY YWETIGRTIE FPFNLSPNYD 360 ALRENFTWDS LPCTSEMSTN YVTSVAKCYT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-45 | 19 | 185 | 19 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-45 | 19 | 185 | 19 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-45 | 19 | 185 | 19 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-45 | 19 | 185 | 19 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-45 | 19 | 185 | 22 | 172 | NAC domain-containing protein 19 |
3swm_B | 5e-45 | 19 | 185 | 22 | 172 | NAC domain-containing protein 19 |
3swm_C | 5e-45 | 19 | 185 | 22 | 172 | NAC domain-containing protein 19 |
3swm_D | 5e-45 | 19 | 185 | 22 | 172 | NAC domain-containing protein 19 |
3swp_A | 5e-45 | 19 | 185 | 22 | 172 | NAC domain-containing protein 19 |
3swp_B | 5e-45 | 19 | 185 | 22 | 172 | NAC domain-containing protein 19 |
3swp_C | 5e-45 | 19 | 185 | 22 | 172 | NAC domain-containing protein 19 |
3swp_D | 5e-45 | 19 | 185 | 22 | 172 | NAC domain-containing protein 19 |
4dul_A | 4e-45 | 19 | 185 | 19 | 169 | NAC domain-containing protein 19 |
4dul_B | 4e-45 | 19 | 185 | 19 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004489492.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004489492.1 | 0.0 | putative NAC domain-containing protein 94 isoform X2 | ||||
Swissprot | Q9ZVH0 | 3e-80 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | A0A1S2XK86 | 0.0 | A0A1S2XK86_CICAR; putative NAC domain-containing protein 94 isoform X2 | ||||
STRING | XP_004489492.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2013 | 34 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 1e-82 | NAC family protein |
Publications ? help Back to Top | |||
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