PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004489381.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 296aa MW: 34213 Da PI: 7.1919 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.9 | 8.7e-19 | 101 | 153 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + +++ eq+++Le+ Fe +++ e++ +LAk lgL+ rqV +WFqNrRa++k XP_004489381.1 101 KKRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWK 153 556899**********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 127.4 | 6.2e-41 | 99 | 191 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekk+rls eqvk+LE+sFe +kLeperK++la++Lglqprqva+WFqnrRAR+ktk+lEk+ye Lk++++alk++n+ L++++++L++el++ XP_004489381.1 99 EKKKRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWKTKHLEKEYEILKKQFEALKADNDILKAQNNKLHAELQT 191 69***************************************************************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.42E-19 | 94 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.2 | 95 | 155 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.0E-18 | 98 | 159 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.87E-16 | 100 | 156 | No hit | No description |
Pfam | PF00046 | 3.0E-16 | 101 | 153 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-20 | 107 | 154 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 8.4E-6 | 126 | 135 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 130 | 153 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 8.4E-6 | 135 | 151 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 3.7E-13 | 155 | 194 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 296 aa Download sequence Send to blast |
MAFPPSHTFI FQTHEDHHHH HDHLLSSSTT SLNSFPSFPT HHHFQGGSGA PFMMKRSMSF 60 SGIENNHNQN YNNNNKCEEL VHGDEDQLSD EEGYSQIGEK KKRLSLEQVK ALEKSFEIGN 120 KLEPERKMQL AKALGLQPRQ VAIWFQNRRA RWKTKHLEKE YEILKKQFEA LKADNDILKA 180 QNNKLHAELQ TLKKRDCFEN GTISFKKENE GSWSNGSDNS SDINLGLSRT PMMNSPVSSQ 240 NGKSILPNSL KPTSMTQLLQ CSSRSDLQDE SFCNMFHNID DQQNFWPWPD QQHHFH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004489381.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT148482 | 0.0 | BT148482.1 Medicago truncatula clone JCVI-FLMt-17G6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004489381.1 | 0.0 | homeobox-leucine zipper protein HAT7-like isoform X1 | ||||
Swissprot | Q00466 | 3e-77 | HAT7_ARATH; Homeobox-leucine zipper protein HAT7 | ||||
TrEMBL | A0A1S2XHC6 | 0.0 | A0A1S2XHC6_CICAR; homeobox-leucine zipper protein HAT7-like isoform X1 | ||||
STRING | XP_004489381.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1271 | 33 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15150.1 | 6e-68 | homeobox 3 |