PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004489073.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family WRKY
Protein Properties Length: 308aa    MW: 35099.8 Da    PI: 6.5947
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004489073.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY69.64.6e-22135195259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dDg++WrKYGqK+++++++ rsYYrCt+    +C++ k+v+r++e+p + ++tY g+H ++
  XP_004489073.1 135 DDGHTWRKYGQKKITNAKYFRSYYRCTHMydqHCEAMKHVQRTQENPPLYKTTYYGHHSCK 195
                     8***************************98889*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-23126195IPR003657WRKY domain
PROSITE profilePS5081119.634129197IPR003657WRKY domain
SuperFamilySSF1182901.28E-21130195IPR003657WRKY domain
SMARTSM007744.9E-30134196IPR003657WRKY domain
PfamPF031063.1E-21135195IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MENLFGLSKK AMKEELLRGR DMANQLLEVL SCDDKSNKEV KGSMLSLIAQ DLVGEVLKSL  60
TNTLLLLNNK EDSNDVGVPI TVGNISLLTN FNKMEEDLDG SCKKLKTLNT KNLKGSNKRK  120
SIALTWEKNT SILIDDGHTW RKYGQKKITN AKYFRSYYRC THMYDQHCEA MKHVQRTQEN  180
PPLYKTTYYG HHSCKSSFHS DITFESILSS DSDSNSILLN FDNNIPCKQE YSFWSPSSLP  240
PLVSTKGEPM EVNQVIQDTD HLAQNQLVSS KNLLLCDFDV YFDYLRHATM LSSTETVELE  300
NVCSQFGF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-20134195869OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004489073.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489073.10.0WRKY DNA-binding transcription factor 70-like
TrEMBLA0A1S2XGM50.0A0A1S2XGM5_CICAR; WRKY DNA-binding transcription factor 70-like
STRINGXP_004489073.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF126381134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.14e-23WRKY DNA-binding protein 38