PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

MYB

Protein Properties

Length: 368aa MW: 41527 Da PI: 4.5005

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004488797.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.6	5.2e-17	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W+++Ed++l+ v+++G ++W++ ++ g+ R++k+c++rw +yl XP_004488797.1 16 RGPWSPDEDLKLIAFVQKYGHENWRALPKQAGLQRCGKSCRLRWINYL 63 89********************************************97 PP
2	Myb_DNA-binding	54	3.8e-17	69	114	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+eE+e +++++k G++ W++Ia++m+ gRt++++k+ w+++l XP_004488797.1 69 RGNFTAEEEETIIRLHKAIGNK-WSKIASCMP-GRTDNEIKNVWNTHL 114 89******************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-25	7	66	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.316	11	63	IPR017930	Myb domain
SuperFamily	SSF46689	3.01E-31	14	110	IPR009057	Homeodomain-like
SMART	SM00717	2.2E-13	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	9.5E-16	16	63	IPR001005	SANT/Myb domain
CDD	cd00167	2.87E-10	18	63	No hit	No description
PROSITE profile	PS51294	24.063	64	118	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.3E-27	67	118	IPR009057	Homeodomain-like
SMART	SM00717	5.6E-15	68	116	IPR001005	SANT/Myb domain
Pfam	PF00249	4.6E-15	69	114	IPR001005	SANT/Myb domain
CDD	cd00167	3.33E-10	71	114	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000652	Biological Process	regulation of secondary cell wall biogenesis
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence Send to blast
MGKGRAPCCD KSQVKRGPWS PDEDLKLIAF VQKYGHENWR ALPKQAGLQR CGKSCRLRWI 60 NYLRPDLKRG NFTAEEEETI IRLHKAIGNK WSKIASCMPG RTDNEIKNVW NTHLKKKLVV 120 KNSESSASES KLESSITSSS SSESFLSSNE VPKSTTPATS EFNEQTSQVT MTNEIKKDYE 180 KQLSSNIELV KDPKDSSNIS LSSIESNILN TSQIGDMASP LSYLGSYDVD NILQEVEKPN 240 NLIEIPWESD YDLWNFIENI GTYQSNDQVQ LEGFQASDEN IINFGEENVQ DVVEAKKWSH 300 EFENEFGVGE KLESNKGDGV LPKNYDAVEP EIDPHAFDFN DITMQESELD FGNIQLWPSL 360 PQNNNLGG

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence Send to blast

MGKGRAPCCD KSQVKRGPWS PDEDLKLIAF VQKYGHENWR ALPKQAGLQR CGKSCRLRWI  60
NYLRPDLKRG NFTAEEEETI IRLHKAIGNK WSKIASCMPG RTDNEIKNVW NTHLKKKLVV  120
KNSESSASES KLESSITSSS SSESFLSSNE VPKSTTPATS EFNEQTSQVT MTNEIKKDYE  180
KQLSSNIELV KDPKDSSNIS LSSIESNILN TSQIGDMASP LSYLGSYDVD NILQEVEKPN  240
NLIEIPWESD YDLWNFIENI GTYQSNDQVQ LEGFQASDEN IINFGEENVQ DVVEAKKWSH  300
EFENEFGVGE KLESNKGDGV LPKNYDAVEP EIDPHAFDFN DITMQESELD FGNIQLWPSL  360
PQNNNLGG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-27	16	118	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that binds DNA to the AC cis-elements 5'-ACCTACC-3', 5'-ACCAACC-3' and 5'-ACCTAAC-3' of promoters and specifically activates lignin biosynthetic genes during secondary wall formation mediated by SND1. {ECO:0000269\|PubMed:19122102}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00249	DAP	Transfer from AT1G79180	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004488797.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by UV light (PubMed:9839469). Triggered by salicylic acid and jasmonic acid (PubMed:16463103). Regulated by the SND1 close homologs NST1, NST2, VND6, and VND7 and their downstream targets MYB46 and MYB83 (PubMed:19122102, PubMed:22197883). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:19122102, ECO:0000269\|PubMed:22197883, ECO:0000269\|PubMed:9839469}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004488797.1	0.0	transcription factor MYB63-like
Swissprot	Q6R0A6	2e-79	MYB63_ARATH; Transcription factor MYB63
TrEMBL	A0A1S2XI04	0.0	A0A1S2XI04_CICAR; transcription factor MYB63-like
STRING	XP_004488797.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10029	30	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79180.1	3e-74	myb domain protein 63

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Noda S, et al. The expression of a rice secondary wall-specific cellulose synthase gene, OsCesA7, is directly regulated by a rice transcription factor, OsMYB58/63. Planta, 2015. 242(3): p. 589-600 [PMID:26070439] Vargas L, et al. Improving total saccharification yield of Arabidopsis plants by vessel-specific complementation of caffeoyl shikimate esterase (cse) mutants. Biotechnol Biofuels, 2016. 9: p. 139 [PMID:27390589]