PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_004488556.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

NAC

Protein Properties

Length: 346aa MW: 39848 Da PI: 5.1693

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004488556.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.7	9.1e-57	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yL++k++g+++el ++i+evd+yk+ePwdLp k + +++ ewyf+s+rd+ky++g+r+nrat+ gyWkatgkd++v XP_004488556.1 6 LPPGFRFHPTDEELVAYYLERKITGRTIEL-DIIAEVDLYKCEPWDLPeKsFLPSKDMEWYFYSPRDRKYPNGSRTNRATRGGYWKATGKDRAVN 99 79**************************.99**********95345556888********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++++vg+kktLv+ykgrap+g +t+Wvmheyrl XP_004488556.1 100 S-QKRQVGMKKTLVYYKGRAPHGIRTNWVMHEYRL 133 9.9999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-64	3	157	IPR003441	NAC domain
PROSITE profile	PS51005	60.665	6	157	IPR003441	NAC domain
Pfam	PF02365	3.2E-29	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MAPMTLPPGF RFHPTDEELV AYYLERKITG RTIELDIIAE VDLYKCEPWD LPEKSFLPSK 60 DMEWYFYSPR DRKYPNGSRT NRATRGGYWK ATGKDRAVNS QKRQVGMKKT LVYYKGRAPH 120 GIRTNWVMHE YRLMESHPGA SLSSLKDSYS LCRIFKKTIE IPTKLKENQE QLEDTKKEQG 180 QGEDSSGTEI SREMENMDHE KVLNNHEHPK FPCDASSSDV TQGTYTPTNT CNNITDDFQP 240 QFACDEANSA SISYPMGIGY PSNIFQDIEI PMYGGFHNHI PEAPFMMEDL PQINIMDTKS 300 TLMKPEMIIT DDCILYDRYR DCMNGTLEEI ISLCSSQDHS MAFPML

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MAPMTLPPGF RFHPTDEELV AYYLERKITG RTIELDIIAE VDLYKCEPWD LPEKSFLPSK  60
DMEWYFYSPR DRKYPNGSRT NRATRGGYWK ATGKDRAVNS QKRQVGMKKT LVYYKGRAPH  120
GIRTNWVMHE YRLMESHPGA SLSSLKDSYS LCRIFKKTIE IPTKLKENQE QLEDTKKEQG  180
QGEDSSGTEI SREMENMDHE KVLNNHEHPK FPCDASSSDV TQGTYTPTNT CNNITDDFQP  240
QFACDEANSA SISYPMGIGY PSNIFQDIEI PMYGGFHNHI PEAPFMMEDL PQINIMDTKS  300
TLMKPEMIIT DDCILYDRYR DCMNGTLEEI ISLCSSQDHS MAFPML

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-58	1	157	15	168	NAC domain-containing protein 19
3swm_B	2e-58	1	157	15	168	NAC domain-containing protein 19
3swm_C	2e-58	1	157	15	168	NAC domain-containing protein 19
3swm_D	2e-58	1	157	15	168	NAC domain-containing protein 19
3swp_A	2e-58	1	157	15	168	NAC domain-containing protein 19
3swp_B	2e-58	1	157	15	168	NAC domain-containing protein 19
3swp_C	2e-58	1	157	15	168	NAC domain-containing protein 19
3swp_D	2e-58	1	157	15	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00205	DAP	Transfer from AT1G54330	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004488556.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC149492	1e-117	AC149492.14 Medicago truncatula clone mth2-99d10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004488556.1	0.0	NAC domain-containing protein 71
Swissprot	A4VCM0	5e-86	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A1S2XFF8	0.0	A0A1S2XFF8_CICAR; NAC domain-containing protein 71
STRING	XP_004488556.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10508	33	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G54330.1	4e-98	NAC domain containing protein 20

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]