PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004488485.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 349aa    MW: 38161.4 Da    PI: 6.4004
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004488485.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-18189243256
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     rk+ +++k+q   Lee F+++++++ +++  LAk+l+L+ rqV vWFqNrRa+ k
  XP_004488485.1 189 RKKLRLSKDQSAFLEESFKEHNTLNPKQKLALAKSLNLSPRQVEVWFQNRRARTK 243
                     678899***********************************************98 PP
2HD-ZIP_I/II127.84.5e-41189279192
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                     +kk+rlsk+q+++LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk
  XP_004488485.1 189 RKKLRLSKDQSAFLEESFKEHNTLNPKQKLALAKSLNLSPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELR-ALK 279
                     69*************************************************************************************9.555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046183.6E-630136IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466898.55E-19177246IPR009057Homeodomain-like
PROSITE profilePS5007117.216185245IPR001356Homeobox domain
SMARTSM003895.5E-17187249IPR001356Homeobox domain
CDDcd000861.61E-16189246No hitNo description
PfamPF000461.2E-15189243IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-17189243IPR009057Homeodomain-like
PROSITE patternPS000270220243IPR017970Homeobox, conserved site
SMARTSM003401.4E-24245288IPR003106Leucine zipper, homeobox-associated
PfamPF021835.3E-11245279IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MELDLSLGDS SKPLIGFMEN QHREASNELG LGFNTTLSIG PVITTQTDQQ QQIKTKTNNN  60
SNSTENPNPV LNQLDLLPPL SFPWHSPSEN VGSLLVSTEF GGSSRGLDVN VVPLAVVVAE  120
DEAALSSSPN SAASSFQMDL CIYSGGGGGG SLSGSGGNKR EFSDGEGYYQ RNCSRVSDDD  180
DNCGGGNTRK KLRLSKDQSA FLEESFKEHN TLNPKQKLAL AKSLNLSPRQ VEVWFQNRRA  240
RTKLKQTEVD CEYLKRCCET LTEENRRLHK ELQELRALKT SNPFNMQLPA TTLTMCPSCE  300
RVATNSTATS SVTTSATIKT SDDSTSKSNN NIGFPFGKPR IHQHHLELN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187193TRKKLRL
2237245RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004488485.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ1181150.0DQ118115.2 Medicago sativa type II homeodomain-leucine zipper protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004488485.10.0homeobox-leucine zipper protein HOX11-like
SwissprotQ67UE24e-84HOX11_ORYSJ; Homeobox-leucine zipper protein HOX11
TrEMBLA0A1S2XFA80.0A0A1S2XFA8_CICAR; homeobox-leucine zipper protein HOX11-like
STRINGXP_004488485.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.17e-75homeobox from Arabidopsis thaliana