PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004488302.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 314aa MW: 36033.7 Da PI: 4.4632 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.9 | 5.5e-13 | 9 | 52 | 1 | 44 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 kri+n+ r++tf R+ng+ KK +E S +aev++i++ s+g XP_004488302.1 9 KRIQNEKVRKTTFVHRKNGLSKKVSEFSSIFGAEVCLIVYDSDG 52 79**************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 7.4E-13 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.45E-17 | 1 | 77 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.283 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 5.98E-17 | 2 | 76 | No hit | No description |
PRINTS | PR00404 | 2.8E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.2E-13 | 10 | 52 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MGRPKTNLKR IQNEKVRKTT FVHRKNGLSK KVSEFSSIFG AEVCLIVYDS DGSDIPMTFP 60 ENATTVQSML KKYEHQKIET TLEEFGVKDY YANKKNLVEA EISRVRKEIL KKKYPTSSPI 120 FHNMEEEQLK AFIAFVDSKI EACNHMLKNM QQKDTCFVQN MAQDSDVCLH SSQDNVVMHN 180 LPQMQHITDF MEPTNDDISE WIDFSDLSDL PPVSSINQLS KLVEWDDIKV ESEGFTSFIH 240 STMQNITYDN VLSSNSSQLD VNHNIPQIQN ITGCMLPPYD DICDMVDFSG LIDWDNIVAE 300 PEDFTVVEDD FLCI |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004488302.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004488302.1 | 0.0 | floral homeotic protein GLOBOSA-like | ||||
TrEMBL | A0A1S2XEY1 | 0.0 | A0A1S2XEY1_CICAR; floral homeotic protein GLOBOSA-like | ||||
STRING | XP_004488302.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF534 | 31 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 2e-15 | AGAMOUS-like 82 |