PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487795.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 759aa    MW: 86747.8 Da    PI: 6.5707
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487795.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1674.9e-2159152190
            FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 
                     +fY+++Ak+ GFs+r+++++ +    + +t+r+f+C + g+++++  ++ k +r+r++tr+gC+a +++ k+      +w+vt +++ HnHel 
  XP_004487795.1  59 EFYCSFAKQFGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGFPQNKPPEDGKVQRNRKSTRCGCQAYMRIVKRAdfdVPEWRVTGFRNIHNHELL 152
                     6***************9998874556679*****************999*******************98887676789*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.7E-1859152IPR004330FAR1 DNA binding domain
PfamPF105514.0E-23275366IPR018289MULE transposase domain
PROSITE profilePS509669.644554587IPR007527Zinc finger, SWIM-type
PfamPF044341.0E-6561584IPR007527Zinc finger, SWIM-type
SMARTSM005757.9E-7562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MSEGASLVLE SSENGTDLSQ DDIGTVEETP EETILSRQTS VNLVPFIGQR FVSQEAAYEF  60
YCSFAKQFGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGFP QNKPPEDGKV QRNRKSTRCG  120
CQAYMRIVKR ADFDVPEWRV TGFRNIHNHE LLKSNEVRPL PAYCPISPDD KSRICMFAKA  180
GMSVRQMLRL MELEKGIKLG CLPFTEIDVR NLLQSFRNVD KDNDAIDLIA MCKRLKDENH  240
NFKYDFKIDN NNRLEHIAWS YGSSIQSYEA FGDAVVFDTT YRVEAYDMLL GIWLGVDNNG  300
MICCFSCALL RDENMSSFSW ALKAFLGFMK GKAPLTILTD HNTWLKEAIA VEMPDTKHAF  360
CIWHIISKFS DWFSLLLGLQ YDEWKAEFHR LYNLEMVEDF EEGWRQMVDK YGLHTNKHII  420
SLYSLRTFWA LPFLRRHFFA GLTSTCQTES ISFLIQRFLS AQSQPDRFLE QVADIVDFND  480
RAGAKQKIQK KMQKVCLKTG SPIESHAATI LTPYALSKLQ EELVLAPQYA SFLVDEGCFQ  540
VRHHSQTDGG CKVFWVPCQE LISCSCHLFE FSGILCRHVL RVMSTNNCFH IPDQYLPVRW  600
RSIGSSSVNH FQVATSRDQP EKIQFLESLV STLLMESVET DERLDVACDQ VSMVLSRIKT  660
LPRSSSHGVN DIAYSYASDS LILPEVEDTD EMIHGFAIAN PHDSMALDKL KERRARDGVE  720
LTRKRRQFSA PLCAQYGHDG SDCSIMAGDN LNEDALGYL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1721726TRKRRQ
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487795.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1915990.0AC191599.4 Medicago truncatula chromosome 2 BAC clone mth2-181i5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487795.10.0protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLA0A1S2XG380.0A0A1S2XG38_CICAR; protein FAR1-RELATED SEQUENCE 11-like
STRINGXP_004487795.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]