PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487630.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family GRAS
Protein Properties Length: 578aa    MW: 64794 Da    PI: 6.2646
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487630.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS426.12.9e-1302085771373
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l++lL++cA+a+s+++++  ++l++  ++ +s +g+p+qRl ay++e+L ar   s++++y+al+++e +    ++ l++++l++e++P+lkf++
  XP_004487630.1 208 LKQLLIACAKAMSENNTKDFDRLIEMAKNVVSINGEPIQRLGAYIVEGLVARKEASGNSIYHALKCREPE---GKDLLSYMQLLFEICPYLKFGY 299
                     689******************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     ++aN aI ea  +e+++HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  + + le +ge+La + e++g+p+ef+  v     d
  XP_004487630.1 300 MAANGAIAEACRNEDHIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSKyaRGDGLEVVGEKLALMSEKFGIPVEFHG-VPVFAPD 393
                     *******************************************************999999**************************.6888999 PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     ++ ++L++k+gEalaVn+ lqlh++ desv+++++rd +L+lvkslsPkvv++veqe+++n+++F++rf+e+l+yy a+f+s++++l+r+s+eri
  XP_004487630.1 394 ITRDMLDIKHGEALAVNFPLQLHHTADESVDVNNPRDGLLRLVKSLSPKVVTLVEQESNTNTTPFFNRFIETLDYYLAIFESIDVTLSRNSKERI 488
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                     +vE+++l+r+ivnv+aceg+er+erhe ++kW++r+++aGF++ pls+++++ +++llr ++ + y++ e++g+++lgWk+r+L+s+SaW
  XP_004487630.1 489 NVEQHCLARDIVNVIACEGKERVERHELFGKWKSRFTMAGFQQCPLSSYVNSVIRSLLRCYS-ENYTLLEKDGAMLLGWKNRNLISASAW 577
                     **********************************************************9999.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.945182559IPR005202Transcription factor GRAS
PfamPF035141.0E-127208577IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MDSQQLYSFN VNSAGFPYMS SFPTIPSLPN RILGNLKVGI GNSPNSPFSS HFDSDTHSAF  60
SDSQEQHNSG EILSGISPSY NSSLETNHYM HRSVSSVNSL KERLQLYSAR NSLLQSNQKV  120
LLELETALMA PDDNEVTTSN SSLGESVRET TSGQRHRLWN HEHQESQYIQ SQPSYVTSSR  180
QSNEAVHVEK RRKLEEESST QGFPLSDLKQ LLIACAKAMS ENNTKDFDRL IEMAKNVVSI  240
NGEPIQRLGA YIVEGLVARK EASGNSIYHA LKCREPEGKD LLSYMQLLFE ICPYLKFGYM  300
AANGAIAEAC RNEDHIHIID FQIAQGTQWM TLLQALAARP GGAPHVRITG IDDPVSKYAR  360
GDGLEVVGEK LALMSEKFGI PVEFHGVPVF APDITRDMLD IKHGEALAVN FPLQLHHTAD  420
ESVDVNNPRD GLLRLVKSLS PKVVTLVEQE SNTNTTPFFN RFIETLDYYL AIFESIDVTL  480
SRNSKERINV EQHCLARDIV NVIACEGKER VERHELFGKW KSRFTMAGFQ QCPLSSYVNS  540
VIRSLLRCYS ENYTLLEKDG AMLLGWKNRN LISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-6221557726378Protein SCARECROW
5b3h_A4e-6221557725377Protein SCARECROW
5b3h_D4e-6221557725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487630.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487630.10.0scarecrow-like protein 21
RefseqXP_027187692.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A1S2XDG90.0A0A1S2XDG9_CICAR; scarecrow-like protein 21
STRINGXP_004487630.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42993360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-174scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]