PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

WRKY

Protein Properties

Length: 345aa MW: 38209.4 Da PI: 6.5044

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004487582.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	92.1	4.3e-29	155	213	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+ + +tY eHnh+ XP_004487582.1 155 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRVDPTNLLVTYAYEHNHP 213 69***********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.8E-30	146	215	IPR003657	WRKY domain
SuperFamily	SSF118290	1.7E-25	150	215	IPR003657	WRKY domain
SMART	SM00774	1.0E-35	154	214	IPR003657	WRKY domain
PROSITE profile	PS50811	31.8	155	215	IPR003657	WRKY domain
Pfam	PF03106	1.1E-24	156	213	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MMYCSHVHNK LHCQSVTPWR LILNTNPNPF FSLTFTLLLS SPPPLPSFSG DPTFPITIFY 60 TNQLLKKFIN FLLLLLPLIM YKRRFNTKPL YVTDPDEPEP EPISEAAPAS PSSCEDTKTE 120 EPSPKKRKEM KKRVVTIPIG EVEGSKSKGE TYPPSDSWAW RKYGQKPIKG SPYPRGYYRC 180 SSSKGCPARK QVERSRVDPT NLLVTYAYEH NHPLPLPKSH SSSSAVTVTV ETPSTGDSSA 240 ECAATTVHPE DLTVFAAHPD FELAGDSTIL LSHHHHAVFG WFDDVASTGV LVSPICGEVE 300 DLTLTMREED ESLFADLGEL PECSAVFRQR NIPSGSVIQC GGITG

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MMYCSHVHNK LHCQSVTPWR LILNTNPNPF FSLTFTLLLS SPPPLPSFSG DPTFPITIFY  60
TNQLLKKFIN FLLLLLPLIM YKRRFNTKPL YVTDPDEPEP EPISEAAPAS PSSCEDTKTE  120
EPSPKKRKEM KKRVVTIPIG EVEGSKSKGE TYPPSDSWAW RKYGQKPIKG SPYPRGYYRC  180
SSSKGCPARK QVERSRVDPT NLLVTYAYEH NHPLPLPKSH SSSSAVTVTV ETPSTGDSSA  240
ECAATTVHPE DLTVFAAHPD FELAGDSTIL LSHHHHAVFG WFDDVASTGV LVSPICGEVE  300
DLTLTMREED ESLFADLGEL PECSAVFRQR NIPSGSVIQC GGITG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	1e-18	132	215	6	79	Disease resistance protein RRS1
5w3x_D	1e-18	132	215	6	79	Disease resistance protein RRS1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004487582.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT144536	1e-114	BT144536.1 Medicago truncatula clone JCVI-FLMt-4P21 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004487582.1	0.0	probable WRKY transcription factor 69
Swissprot	Q93WV5	2e-73	WRK69_ARATH; Probable WRKY transcription factor 69
TrEMBL	A0A1S2XFP0	0.0	A0A1S2XFP0_CICAR; probable WRKY transcription factor 69
STRING	XP_004487582.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2770	34	75

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58710.2	2e-60	WRKY DNA-binding protein 69

Publications ? help Back to Top
Haas BJ, et al. Full-length messenger RNA sequences greatly improve genome annotation. Genome Biol., 2002. 3(6): p. RESEARCH0029 [PMID:12093376] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]