PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487506.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family C2H2
Protein Properties Length: 304aa    MW: 35114.7 Da    PI: 8.1179
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487506.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.91.8e-05144163120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     + C++C+k+F+r  n++ H+
  XP_004487506.1 144 FACSICSKTFNRYNNMQMHM 163
                     78*****************9 PP
2zf-C2H214.69.3e-05228250123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +C+ksF  k + ++H +++
  XP_004487506.1 228 FICRKCSKSFAVKGDWRTHEKNC 250
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.87E-5130167No hitNo description
PROSITE profilePS5015710.45144171IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.2E-5144163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17144166IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146166IPR007087Zinc finger, C2H2
SMARTSM00355140191223IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.6E-5214248IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.26E-6214248No hitNo description
SMARTSM0035550228248IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGLRDHCINV EDKNLYLQTP TFIEWLKPSS SLSSSSPSSS LPHHEHKLSQ ETFQFLPILS  60
GTKSFEENHV MQKEDFEVKE EKVALHIGLP NTNDDDHDEK IKGFHVKEEE EEELKKNIHG  120
FSLKEEKRFW IPTPSQILVG PMQFACSICS KTFNRYNNMQ MHMWGHGSEF RKGPDSLKGT  180
QPAAMLRLPC YCCSHGCKNN INHPRAKPLK DFRTLQTHYK RKHGTKPFIC RKCSKSFAVK  240
GDWRTHEKNC GKFWYCTCGS DFKHKRSLKD HVRSFGKGHS PNPSLEGFDD EKECNTGSDE  300
DQHC
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487506.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2350921e-169AC235092.3 Medicago truncatula strain A17 clone mth2-24c5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487506.10.0zinc finger protein WIP3-like
SwissprotQ9SGD11e-116ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A1S2XG550.0A0A1S2XG55_CICAR; zinc finger protein WIP3-like
STRINGXP_004487506.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-114WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]