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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004487438.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | YABBY | ||||||||
Protein Properties | Length: 184aa MW: 20591.4 Da PI: 8.9673 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 218.8 | 1.7e-67 | 6 | 159 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 + e+vCyv+CnfCnt lavsvP +sl+++vtvrCGhC++llsvn+ + q + +++ +++ ++ l ++e+ + v +++s+ + + XP_004487438.1 6 MANERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQSFPPQQD-----HPQKQQLLSCHQETSRREVGSSSSKCK---A- 91 5789******************************************999998887775.....233333334444333333322222222...2. PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 e +e pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_004487438.1 92 --FETVAHEQPRTPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 159 ..2345678899888.9****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 6.1E-74 | 7 | 159 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.02E-8 | 99 | 152 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 3.6E-5 | 107 | 153 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development | ||||
GO:0010158 | Biological Process | abaxial cell fate specification |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
MSMEMMANER VCYVHCNFCN TTLAVSVPCS SLLTIVTVRC GHCANLLSVN MGASLQSFPP 60 QQDHPQKQQL LSCHQETSRR EVGSSSSKCK AFETVAHEQP RTPPIRPPEK RQRVPSAYNR 120 FIKEEIQRIK ASNPDISHRE AFSTAAKNWA HFPHIHFGLK LDGSKQAKLD HGVGDATQKS 180 NGFY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004487438.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004487438.1 | 1e-138 | putative axial regulator YABBY 2 | ||||
Refseq | XP_004487439.1 | 1e-138 | putative axial regulator YABBY 2 | ||||
Swissprot | Q9XFB0 | 8e-78 | YAB2_ARATH; Putative axial regulator YABBY 2 | ||||
TrEMBL | A0A1S2XD17 | 1e-136 | A0A1S2XD17_CICAR; putative axial regulator YABBY 2 | ||||
STRING | XP_004487438.1 | 1e-137 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1124 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08465.1 | 3e-80 | YABBY family protein |
Publications ? help Back to Top | |||
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