PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

YABBY

Protein Properties

Length: 184aa MW: 20591.4 Da PI: 8.9673

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004487438.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	218.8	1.7e-67	6	159	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsse 99 + e+vCyv+CnfCnt lavsvP +sl+++vtvrCGhC++llsvn+ + q + +++ +++ ++ l ++e+ + v +++s+ + + XP_004487438.1 6 MANERVCYVHCNFCNTTLAVSVPCSSLLTIVTVRCGHCANLLSVNMGASLQSFPPQQD-----HPQKQQLLSCHQETSRREVGSSSSKCK---A- 91 5789****************************************999998887775.....233333334444333333322222222...2. PP YABBY 100 klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 e +e pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl XP_004487438.1 92 --FETVAHEQPRTPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 159 ..2345678899888.9**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	6.1E-74	7	159	IPR006780	YABBY protein
SuperFamily	SSF47095	1.02E-8	99	152	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.6E-5	107	153	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MSMEMMANER VCYVHCNFCN TTLAVSVPCS SLLTIVTVRC GHCANLLSVN MGASLQSFPP 60 QQDHPQKQQL LSCHQETSRR EVGSSSSKCK AFETVAHEQP RTPPIRPPEK RQRVPSAYNR 120 FIKEEIQRIK ASNPDISHRE AFSTAAKNWA HFPHIHFGLK LDGSKQAKLD HGVGDATQKS 180 NGFY

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004487438.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004487438.1	1e-138	putative axial regulator YABBY 2
Refseq	XP_004487439.1	1e-138	putative axial regulator YABBY 2
Swissprot	Q9XFB0	8e-78	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A1S2XD17	1e-136	A0A1S2XD17_CICAR; putative axial regulator YABBY 2
STRING	XP_004487438.1	1e-137	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	3e-80	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]