PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487400.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 768aa    MW: 83518.5 Da    PI: 5.933
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487400.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox64.31.7e-2098153156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     +++ +++t++q++e+e++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k
  XP_004487400.1  98 KKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 153
                     688999***********************************************999 PP
2START218.91.7e-682885071206
                     HHHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
           START   1 elaeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                     ela +a++el+ +a+ ++p+W +      ++n++e++++f+++ +     ++ ea+r++ +v+m++++lve+l+d++ qW++ +     +a+tle
  XP_004487400.1 288 ELAVAAMEELIGMAQMGDPLWLTTLeggLILNEEEYVRSFPRGIGpkpagFKNEASRETSLVIMNHVNLVEILMDVN-QWSTVFSgivsRAMTLE 381
                     57899********************99999************999********************************.***************** PP

                     EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS
           START  84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvd 171
                     v+s+g      galq+m+aelq++splvp R+++fvRy++q+g+g+w++vdvS+d+ ++ p    ++R++++pSg+li++++ng+skv+wvehv+
  XP_004487400.1 382 VLSTGvagnynGALQVMTAELQVPSPLVPtRESYFVRYCKQHGDGTWAVVDVSLDNLRPSP----SARCRRRPSGCLIQEMPNGYSKVIWVEHVE 472
                     ***********************************************************99....5***************************** PP

                     --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 172 lkgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++r +h+l+++lv+sg+a+gak+w atl+rqce+
  XP_004487400.1 473 VDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCER 507
                     *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-2277153IPR009057Homeodomain-like
SuperFamilySSF466891.3E-1988156IPR009057Homeodomain-like
PROSITE profilePS5007116.98995155IPR001356Homeobox domain
SMARTSM003891.3E-1996159IPR001356Homeobox domain
CDDcd000862.26E-1998156No hitNo description
PfamPF000464.4E-1898153IPR001356Homeobox domain
PROSITE patternPS000270130153IPR017970Homeobox, conserved site
SuperFamilySSF559615.16E-35279509No hitNo description
PROSITE profilePS5084844.034279510IPR002913START domain
CDDcd088756.17E-129283506No hitNo description
SMARTSM002343.5E-64288507IPR002913START domain
PfamPF018523.2E-57289507IPR002913START domain
Gene3DG3DSA:3.30.530.202.8E-5389502IPR023393START-like domain
SuperFamilySSF559611.1E-23527760No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010090Biological Processtrichome morphogenesis
GO:0048497Biological Processmaintenance of floral organ identity
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MPAGLMIPAR NMPSMIGTNN VGSFGFSSSL SLSQPNLMEA GHHHQHQLLP LDMPQNTSES  60
DVPRIREDEL FDSATKSGSE NQEGGGASGE DQEPRAKKKR YHRHTQHQIQ EMEAFFKECP  120
HPDDKQRKEL SRELGLEPLQ VKFWFQNKRT QMKTQQERHE NTQLRTENEK LRADNMRFRE  180
ALSNTSCPNC GGPTAIGEMS FDEHHLRLEN ARLREEIDRI SGIAAKYVGK PVVSYPLLSP  240
SSVPPRPLEL GMGGFGGQAG VGGDMYGGGD LLRSISGPTE ADKPMIIELA VAAMEELIGM  300
AQMGDPLWLT TLEGGLILNE EEYVRSFPRG IGPKPAGFKN EASRETSLVI MNHVNLVEIL  360
MDVNQWSTVF SGIVSRAMTL EVLSTGVAGN YNGALQVMTA ELQVPSPLVP TRESYFVRYC  420
KQHGDGTWAV VDVSLDNLRP SPSARCRRRP SGCLIQEMPN GYSKVIWVEH VEVDDRGVHN  480
LYKQLVSSGH AFGAKRWIAT LDRQCERLAS AMATNIPTVD VGVITNQDGR KSMLKLAERM  540
CISFCAGVSA STAHTWTTLS GTGADDVRVM TRKSVDDPGR PAGIVLSAAT SFWLPVPPKR  600
VFEFLRDENS RSEWDILSNG GVVQEMAHIA NGRDTGNCVS LLRVNSANSS QSNMLILQES  660
CTDTTGSFVI YAPVDIVAMN VVLNGGDPDY VALLPSGFAI LPDGTTTTTT NGSAESGHGG  720
GSLLTVAFQI LVDSVPTAKL SLGSVATVNN LIACTVERIK ASLSGEVA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027187202.10.0LOW QUALITY PROTEIN: homeobox-leucine zipper protein HDG2
SwissprotQ94C370.0HDG2_ARATH; Homeobox-leucine zipper protein HDG2
TrEMBLA0A3Q7Y7N70.0A0A3Q7Y7N7_CICAR; LOW QUALITY PROTEIN: homeobox-leucine zipper protein HDG2
STRINGXP_004487400.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15083499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05230.40.0homeodomain GLABROUS 2