PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004487266.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | C3H | ||||||||
Protein Properties | Length: 392aa MW: 44626.8 Da PI: 8.1461 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 27.8 | 4.3e-09 | 116 | 137 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 + C+ ++r G C++Gd+C FaHg XP_004487266.1 116 SVCSEYRR-GSCNRGDTCEFAHG 137 68******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 8.4E-5 | 112 | 138 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 12.371 | 113 | 139 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-5 | 116 | 139 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.9E-7 | 116 | 137 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.287 | 147 | 171 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4 | 147 | 170 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010187 | Biological Process | negative regulation of seed germination | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MTTICEQQQQ HKFHSSYQPL SPKKPLREID IPPRKLLTRR TADMFSDDTI LQKFLPHNDS 60 DSDSDDPYSS DHFRMYEFKV RRCTRSRSHD WTDCPFAHPG EKARRRDPRR FHYSGSVCSE 120 YRRGSCNRGD TCEFAHGVFE CWLHPARYRT EACKDGKNCK RKVCFFAHTP RQLRILPVTS 180 SNSNDQFSCN KKNNKILNNH VGSKTNNCCL FCHCNGANNS PTSTLFGMSH FSPPASPPLS 240 PMKPRNGVSS VSSLARYGSV NNSNNLRYRD MLVDLLGSFE GLNFNENSSS SCSSPVSKIQ 300 NNNMGWLDLP LNSEEQQYQQ FIVSPSSSSS FDQQQQNFDI HQNLMTPSFN DIGDNNIIEN 360 KMMFLGNENN KMVVGGGEVN APDLGWVNEL LM |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004487266.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004487266.1 | 0.0 | zinc finger CCCH domain-containing protein 61 | ||||
TrEMBL | A0A1S2XCN4 | 0.0 | A0A1S2XCN4_CICAR; zinc finger CCCH domain-containing protein 61 | ||||
STRING | XP_004487266.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6261 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03790.1 | 1e-72 | C3H family protein |