PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

XP_004487250.1

Organism

Cicer arietinum

Taxonomic ID

3827

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

LBD

Protein Properties

Length: 197aa MW: 22436.4 Da PI: 5.0372

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004487250.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.8	9.3e-44	24	123	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++Cvlapyfp +qp+kf vh++FGasn++k+l+++pe++r da+ss+vyeA ar+rdPvyG++g+i +lq+q+++l+++la XP_004487250.1 24 PCAACKFLRRRCAEKCVLAPYFPPTQPAKFTTVHRVFGASNIIKILQEIPESQRADAVSSMVYEASARIRDPVYGCAGTICHLQKQINELQEQLA 118 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_004487250.1 119 KTQAE 123 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.861	23	124	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.7E-44	24	121	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MESDKITNIF SQYSSTSPQV VMSPCAACKF LRRRCAEKCV LAPYFPPTQP AKFTTVHRVF 60 GASNIIKILQ EIPESQRADA VSSMVYEASA RIRDPVYGCA GTICHLQKQI NELQEQLAKT 120 QAEIINKQFE QANLMTLICN MEMEETPQES PQQSFDNFIS SPSHNSDYHN NLNFFEENNI 180 GLISSWEPLW TFKINEN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-43	23	126	10	113	LOB family transfactor Ramosa2.1
5ly0_B	5e-43	23	126	10	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004487250.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004487250.1	1e-146	LOB domain-containing protein 1-like
Swissprot	Q9SK08	1e-75	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A1S2XCK5	1e-145	A0A1S2XCK5_CICAR; LOB domain-containing protein 1-like
STRING	XP_004487250.1	1e-146	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1303	34	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	5e-78	LOB domain-containing protein 11