PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer

Family

bHLH

Protein Properties

Length: 388aa MW: 43619.8 Da PI: 6.5153

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_004487228.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25	3.5e-08	293	333	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++++P +K++ a++L +A +Y+k L XP_004487228.1 293 ARQRRERISERIRVLQKIVPGG-----TKMDTASMLDEAANYLKFL 333 69****************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.256	284	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.5E-12	286	342	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.18E-13	288	345	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.2E-12	290	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.1E-5	293	333	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.13E-4	306	338	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MDSLIWNDSQ QLVVNNNIPN LWNTQPQDLE RDYSTSSLLN YQMKDIITMI PNTNSGAGIS 60 CEENLIFQSC PSLSANYVQD FNMIHQQHLI NGTQNNKATK ISLESLDCLL SATNSYNTDT 120 SVEDDGISMI FSDCRKNLLN LSYYGSAVSS AESQSNTSNQ SSSDQGKIID SIVHSTKRTN 180 DHYDYDPYFS ITQNSCPNES GFKLISEKPP KSKKPRWDNK CPGSSNINFQ QPNSSTLSST 240 IEEPDPEAIA QMKEMIYRAA AFRPVMNLGL EEVMEKPKRK NVKISKDPQT VAARQRRERI 300 SERIRVLQKI VPGGTKMDTA SMLDEAANYL KFLRSQVKAL ENLGNKIDAM NNNFPPTSIA 360 FSFNPLNPMQ THFPIQNSNN HNIQYSKG

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MDSLIWNDSQ QLVVNNNIPN LWNTQPQDLE RDYSTSSLLN YQMKDIITMI PNTNSGAGIS  60
CEENLIFQSC PSLSANYVQD FNMIHQQHLI NGTQNNKATK ISLESLDCLL SATNSYNTDT  120
SVEDDGISMI FSDCRKNLLN LSYYGSAVSS AESQSNTSNQ SSSDQGKIID SIVHSTKRTN  180
DHYDYDPYFS ITQNSCPNES GFKLISEKPP KSKKPRWDNK CPGSSNINFQ QPNSSTLSST  240
IEEPDPEAIA QMKEMIYRAA AFRPVMNLGL EEVMEKPKRK NVKISKDPQT VAARQRRERI  300
SERIRVLQKI VPGGTKMDTA SMLDEAANYL KFLRSQVKAL ENLGNKIDAM NNNFPPTSIA  360
FSFNPLNPMQ THFPIQNSNN HNIQYSKG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	293	298	RQRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_004487228.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004487228.1	0.0	transcription factor bHLH87
Refseq	XP_027191748.1	0.0	transcription factor bHLH87
Swissprot	Q8S3D2	9e-82	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A1S2XCJ5	0.0	A0A1S2XCJ5_CICAR; transcription factor bHLH87
STRING	XP_004487228.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	1e-69	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]