PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004487103.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92005.2 Da    PI: 6.4109
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004487103.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.42.5e-182381357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_004487103.1 23 KYVRYTAEQIEALEKVYVECPKPSSMRRQQLIRECpvlsNIEPKQIKVWFQNRRCREKQ 81
                    56789****************************************************97 PP
2START149.33.5e-471643712204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+ + +++g++++ +f+ s++++g a+ra+g+   ++++ ve+l d++  W +++++ e+      g  g+++l 
  XP_004487103.1 164 IAEETLAEFLSKATGTAVDWVQIPGMKPGPDSVGIFAISQSCDGVAARACGLISLEPTKIVEILKDRP-SWFRDCRSSEVFTMFPAGngGTIELV 257
                     7899******************************************************9999999999.**********9999999999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+ +l++ Rdf+++Ry+ +l+ g+ v++++S++     p+    s+++Rae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l+
  XP_004487103.1 258 YTQMYAPMTLASaRDFWTLRYTTSLENGSVVVCERSLSGSGAGPNaaaASQFARAEMLPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVLRPLY 352
                     ******9999999*************************99999999999********************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + +++++ a+l++ +
  XP_004487103.1 353 ESSKMVAQRMTIAALRYIR 371
                     **************99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4181882IPR001356Homeobox domain
SMARTSM003892.4E-152086IPR001356Homeobox domain
SuperFamilySSF466898.55E-172087IPR009057Homeodomain-like
CDDcd000862.56E-162383No hitNo description
PfamPF000465.6E-162481IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.1E-182578IPR009057Homeodomain-like
CDDcd146865.70E-775114No hitNo description
Gene3DG3DSA:1.20.5.1702.1E-479130No hitNo description
PROSITE profilePS5084826.245154382IPR002913START domain
Gene3DG3DSA:3.30.530.201.1E-20163350IPR023393START-like domain
SuperFamilySSF559611.51E-34163375No hitNo description
SMARTSM002343.1E-39163373IPR002913START domain
PfamPF018522.1E-44164371IPR002913START domain
PfamPF086701.6E-48699842IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    Send to blast
MAMAVAQQHR DNSIERHLDS SGKYVRYTAE QIEALEKVYV ECPKPSSMRR QQLIRECPVL  60
SNIEPKQIKV WFQNRRCREK QRKEASQLQS VNRKLSAMNK LLMEENERLQ KQVSQLVNEN  120
GFMRQQLRAI PAAANADGSS GDSAAAPPLN SMRDANSPAG LLSIAEETLA EFLSKATGTA  180
VDWVQIPGMK PGPDSVGIFA ISQSCDGVAA RACGLISLEP TKIVEILKDR PSWFRDCRSS  240
EVFTMFPAGN GGTIELVYTQ MYAPMTLASA RDFWTLRYTT SLENGSVVVC ERSLSGSGAG  300
PNAAAASQFA RAEMLPSGYL IRPCEGGGSI IHIVDHLNLQ AWSVPEVLRP LYESSKMVAQ  360
RMTIAALRYI RQIAQETSGE VVYSVGRQPA VLRTFSQRMS RGFNDAVNGF NDDGWSVLNC  420
DGLEDVTIAV NSIKNLSGTS NPASSLTLLG GIVCAKASML LQNITPAVLV RFLREHRSEW  480
ADFSVDAFSA ASLKAGSYAY PGLRPTRFTG NQAIMPLGHS IEHEEMLEVI RLEGHSLAQE  540
DAFVSRDVHL LQLCSGIDEN AVGACSELIF APIDDMFPDD VPLVPSGLRI VLLNSQTSDK  600
KNAVTTKRTL DLTSGLEVGP TTTHAAGDMS LCPNNRSVLT VAFQFPFENG LQDNVAAMAR  660
QYVRRVVSSV QAVAMAISPS SVNPAVGAKL SPGSPEALTL AQWICQSYSH FLGAELLRSE  720
SLIGDMVLKH LWHHPDAILC CSLKSVPVFI FANQAGLDML ETTLVALQDI TLDKIFDESA  780
RKALIAYFAK LMQQGFACMP AGICMSTMGR HASYDQAIAW KVLAEDNSSV HCLAFSFINW  840
SFI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004487103.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004487103.10.0homeobox-leucine zipper protein REVOLUTA
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A1S2XEN60.0A0A1S2XEN6_CICAR; homeobox-leucine zipper protein REVOLUTA
STRINGXP_004487103.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]