PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486947.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 743aa    MW: 85768.2 Da    PI: 6.9834
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486947.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.83.1e-2729114291
            FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                     fY+eYAk+vGF + k +s++s+ ++e+++++f C ++g++++++++     ++r++ ++gCka+++vk+++dgkw+v+++++eHnHel p
  XP_004486947.1  29 FYKEYAKSVGFGTAKLSSRRSRASKEFIDAKFSCIRYGNKQQSDDA----INPRPSPKIGCKASMHVKRRQDGKWYVYSFVKEHNHELLP 114
                     9***************************************999877....9************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.5E-2529114IPR004330FAR1 DNA binding domain
PfamPF105515.6E-30228321IPR018289MULE transposase domain
PROSITE profilePS5096610.484507543IPR007527Zinc finger, SWIM-type
PfamPF044348.3E-8513541IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-7518545IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 743 aa     Download sequence    Send to blast
MDSSVVMGNS VQEPNNEMEF ESHEAAYAFY KEYAKSVGFG TAKLSSRRSR ASKEFIDAKF  60
SCIRYGNKQQ SDDAINPRPS PKIGCKASMH VKRRQDGKWY VYSFVKEHNH ELLPAQAHFF  120
RSHRNSDPLS NDVRMRRRKN STPGSKLFSS YQNVDCLENF MMKHQHDKGR SLVLEVGHAQ  180
LLLELFMHMQ EENPKFFYAV DLNEEHRLRN VFWVDSKGLE DFSYFSDVVS FDTTYFTSKY  240
KIPLVLFIGV NHHVQPTLLG CALIADETVY TYAWLLQTWF VAMGERAPQV FLTDQNDAIK  300
AAVAAVFPGT RHCFCLWHVL EKIPKQLEFL STWHDSFMEK FNKCIFKSWT EEQFERRWWK  360
LVDRFKLRDV KWVQSLYDDR ACWVPTFMRD ISFVGLSSNS RSEILNSFFD KYVQVDTSLR  420
EFIEQYRLIL EDRNEEEAKA NFDAWHETPE LKSPSPFEKQ LLLVYTHEIF QKFQFEVLGA  480
SACHLKKEND GVITTYNVKD FENIQNYMVE WNTSNSDICC SCHLFEYKGY LCRHAIVVLQ  540
MSGVFSIPTK YILKRWTNAA LSRHPIGEKL EEVQSKVRRF NDLCRRAIIL GEEGSLSQES  600
YYIALEALSE ALKQCANLNN SVENAALATH VGCNVEEEYQ SIIASNDNVS DPKMNTGKKA  660
LRTGVASRSL VSVETVEGNK GKVPQLGAAS GNDGFQQMEP TDLRSHNMMP MQFHSMVPVL  720
FHNVSSPFHA AASTHLHDNH LPP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123136RNSDPLSNDVRMRR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486947.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2331770.0AC233177.2 Medicago truncatula strain A17 clone mth2-54k10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486947.10.0protein FAR1-RELATED SEQUENCE 4
SwissprotQ6NQJ70.0FRS4_ARATH; Protein FAR1-RELATED SEQUENCE 4
TrEMBLA0A1S2XEE00.0A0A1S2XEE0_CICAR; protein FAR1-RELATED SEQUENCE 4
STRINGXP_004486947.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.10.0FAR1-related sequence 4
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]