PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_004486914.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 255aa MW: 28963.5 Da PI: 6.0043 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 92.6 | 5e-29 | 90 | 177 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+++ r +vC+keg+r ++k++ k r+raetr+gC+a+++v+k ++g w +tk+++eH+H+l+p XP_004486914.1 90 FYNAYATRVGFIIRVSKLSRSRRDGSVIGRALVCNKEGFRMPDKRE--KIVRQRAETRVGCRAMIMVRKLNSGLWSITKFVKEHTHPLTP 177 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.6E-26 | 90 | 177 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 255 aa Download sequence Send to blast |
MEFGIDDSSN GEAVGNAIMG EVSSSIADKE KMDCSSFEPT DEQDQDDNMT QDSSGVDQIP 60 SAIPAAPLVR SVDEPFIGQE FVSEAEAHAF YNAYATRVGF IIRVSKLSRS RRDGSVIGRA 120 LVCNKEGFRM PDKREKIVRQ RAETRVGCRA MIMVRKLNSG LWSITKFVKE HTHPLTPGRG 180 RRDFVYEQYP SGHDRVRELS QQLAIEKKRS ATYKTNLELL YEYIEEHNET VSKKIQHIVE 240 SVKEMEAKEQ EEKPR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_004486914.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT143407 | 0.0 | BT143407.1 Medicago truncatula clone JCVI-FLMt-16G7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_004486914.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like isoform X1 | ||||
Refseq | XP_012570522.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like isoform X2 | ||||
TrEMBL | A0A1S3E400 | 0.0 | A0A1S3E400_CICAR; protein FAR1-RELATED SEQUENCE 3-like isoform X1 | ||||
STRING | XP_004486914.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2453 | 30 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G59470.2 | 4e-98 | FAR1 family protein |