PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486776.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 835aa    MW: 91991.4 Da    PI: 6.5412
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486776.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.22.8e-181472357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_004486776.1 14 KYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECpilsHIEPKQIKVWFQNRRCREKQ 72
                    5679*****************************************************97 PP
2START174.75.8e-551583662205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W +++++++tl+v+ ++  g+++l 
  XP_004486776.1 158 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPT-RVAEILKDRPSWYRDCRAVDTLNVLPTAngGTIELL 251
                     7899******************************************************.8888888888****************9999****** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rd + +Ry+  l++g++vi+++S+ ++q+ p+    +++vRae+lpSg++i+p+++g+s +++v+h+dl+ ++++++lr+l+
  XP_004486776.1 252 YMQLYAPTTLAPaRDLWLLRYTSVLEDGSLVICERSLKNTQNGPSmppVQHFVRAEMLPSGYMIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLY 346
                     *******************************************9988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     +s+++ ++kt++ +l+++++
  XP_004486776.1 347 ESSTMLAQKTTMVALRHLRQ 366
                     ************99998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.175973IPR001356Homeobox domain
SMARTSM003891.3E-151177IPR001356Homeobox domain
SuperFamilySSF466896.42E-171377IPR009057Homeodomain-like
CDDcd000863.86E-161474No hitNo description
PfamPF000467.9E-161572IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.5E-181672IPR009057Homeodomain-like
CDDcd146861.14E-666105No hitNo description
PROSITE profilePS5084824.824148349IPR002913START domain
CDDcd088752.56E-78152367No hitNo description
Gene3DG3DSA:3.30.530.201.6E-22157363IPR023393START-like domain
SuperFamilySSF559614.4E-37157366No hitNo description
SMARTSM002342.4E-41157367IPR002913START domain
PfamPF018522.0E-52158366IPR002913START domain
PfamPF086701.1E-51692834IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010014Biological Processmeristem initiation
GO:0010075Biological Processregulation of meristem growth
GO:0010087Biological Processphloem or xylem histogenesis
GO:0048263Biological Processdetermination of dorsal identity
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 835 aa     Download sequence    Send to blast
MSCKDGKGGL DNGKYVRYTP EQVEALERLY HDCPKPSSIR RQQLIRECPI LSHIEPKQIK  60
VWFQNRRCRE KQRKEASRLQ AVNRKLTAMN KLLMEENDRL QKQVSHLVYE NGYFRQHTQN  120
TTLATKDTSC DSAVTSGQRS LTAQHPPRDA SPAGLLSIAE ETLAEFLSKA TGTAVEWVQM  180
PGMKPGPDSI GIVAISHGCP GVAARACGLV GLEPTRVAEI LKDRPSWYRD CRAVDTLNVL  240
PTANGGTIEL LYMQLYAPTT LAPARDLWLL RYTSVLEDGS LVICERSLKN TQNGPSMPPV  300
QHFVRAEMLP SGYMIRPCEG GGSIIHIVDH MDLEPWSVPE VLRPLYESST MLAQKTTMVA  360
LRHLRQISHE VSQSNVTGWG RRPAALRALG QRLSRGFNEA LNGFTDEGWS MIGNDGADDV  420
TILVNSSPDK LMGLNLSFAN GFPSVSNAVL CAKASMLLQN VPPAILLRFL REHRSEWADN  480
NMDAYSAAAI KVGPCSLSGS RVGNYGGQVI LPLAHTIEHE EFLEVIKLEG IAHSPEDTIM  540
PREVFLLQLC SGMDENAVGT CAELIFAPID ASFADDAPLL PSGFRIIPLD SGKEVVNPNR  600
TLDLASALDI GPAGNKVSND YSGNSGCMRS VMTIAFEFAF ESHMQEHVAS MARQYVRSII  660
SSVQRVALAL SPSNLSSQAG LRTPLGTPEA QTLARWICNS YRCFLGAELL KSNNEGSESL  720
LKSLWHHSDA ILCCTLKALP VFTFANQAGL DMLETTLVAL QDITLEKIFD DHGRKILCSE  780
FPQIVQQGFA CLQGGLCISS MGRPISYERV VAWKVLNEEE NAHCICFMFM NWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00200DAPTransfer from AT1G52150Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486776.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486776.10.0homeobox-leucine zipper protein ATHB-15
SwissprotQ9ZU110.0ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15
TrEMBLA0A1S2XDZ70.0A0A1S2XDZ7_CICAR; homeobox-leucine zipper protein ATHB-15
STRINGXP_004486776.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]