PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486751.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family HD-ZIP
Protein Properties Length: 776aa    MW: 86239.5 Da    PI: 6.1551
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486751.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.24.4e-21123178156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                     r+k +++t++q++++e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  XP_004486751.1 123 RKKYHRHTAQQIRVMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 178
                     7999************************************************9877 PP
2START2252.3e-702945154206
                     HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEE CS
           START   4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlev 84 
                     ++a++el+k+a+ +ep+W +s     e++n+de++++f+ +++      +s+ea+r++g+v+ +l++ v+ +ld k qW+e+++    ka+t++ 
  XP_004486751.1 294 NQAMEELIKMATKGEPLWLRSLetgrEILNYDEYIKEFAIENSdngrpkRSIEASRDTGLVFSDLPRIVQCFLDAK-QWKEMFPclisKAATVDI 387
                     789*************************************9999********************************.****************** PP

                     ECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS
           START  85 issg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172
                     i++g      ga+qlm+aelq+l+p+vp R+++fvRy++ql++++w+ivdvS+d  +++  ++s+v+++++pSg++ie+ksngh+kvtwveh ++
  XP_004486751.1 388 ICKGensnnnGAVQLMFAELQMLTPMVPtREVYFVRYCKQLSGEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVTWVEHLEC 481
                     **********************************************************98.9********************************* PP

                     -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
           START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206
                     +++ +h+++r +v+sgla+ga++w atlq qce+
  XP_004486751.1 482 QKSAVHSMYRTIVNSGLAFGARHWIATLQLQCER 515
                     ********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.88E-20110181IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.9E-22111174IPR009057Homeodomain-like
PROSITE profilePS5007117.993120180IPR001356Homeobox domain
SMARTSM003893.2E-18122184IPR001356Homeobox domain
PfamPF000461.8E-18123178IPR001356Homeobox domain
CDDcd000861.46E-16127178No hitNo description
PROSITE patternPS000270155178IPR017970Homeobox, conserved site
PROSITE profilePS5084838.644282518IPR002913START domain
SuperFamilySSF559611.92E-31283515No hitNo description
CDDcd088755.90E-108287514No hitNo description
SMARTSM002343.6E-66291515IPR002913START domain
PfamPF018527.6E-56293515IPR002913START domain
Gene3DG3DSA:3.30.530.208.3E-6297327IPR023393START-like domain
Gene3DG3DSA:3.30.530.208.3E-6400510IPR023393START-like domain
SuperFamilySSF559611.65E-14545767No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 776 aa     Download sequence    Send to blast
MLLKKHTLLS STTPTPTPTL SMGADNNPLA SPALSLSLAG IFRQGGVAAE GEGTTSNMEV  60
EEGEEGSTVG GERVEEIISS DNSGPTKSRS EDYFEGEDDE GEGNDDDDGD TNNNNNKHKN  120
KKRKKYHRHT AQQIRVMEAL FKESPHPDEK QRQQLSKQLG LAPRQVKFWF QNRRTQIKAI  180
QERHENSLLK TEIEKLREKN KSLRETINKA CCPNCGVPTT NRDGAMPTEE QQLRIENVKL  240
KAEVEKLRAS LGKYASGTMS PSCSTSHDQE NKSCLDFYTG SFGLDESRIM DVVNQAMEEL  300
IKMATKGEPL WLRSLETGRE ILNYDEYIKE FAIENSDNGR PKRSIEASRD TGLVFSDLPR  360
IVQCFLDAKQ WKEMFPCLIS KAATVDIICK GENSNNNGAV QLMFAELQML TPMVPTREVY  420
FVRYCKQLSG EQWAIVDVSI DKVEDNIDAS LVKCRKRPSG CIIEDKSNGH CKVTWVEHLE  480
CQKSAVHSMY RTIVNSGLAF GARHWIATLQ LQCERLVFFM ATNVPMKDST GVATLAGRKS  540
ILKLAQRMTW SFCHAIGASS LHTWTKVTSK TGEDIRVSSR KNLNDPGEPL GLILCAVSSV  600
WLPISPNVLF DFLRDEARRT EWDIMSSGGS VQSIANLAKG QDRGNAVTIQ TVKSNENNMW  660
ILQDSCTNSY ESMVVYAPVD ITGIQSVMTG CDSSNLVILP SGFSIVPDGL ESRPMVITSR  720
QEEKNTEGGS LFTVAFQILT NASPTAKLTM ESVDSINSLV SCTLRHIRTS LHCEDG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120124KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486751.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486751.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A1S2XEL30.0A0A1S2XEL3_CICAR; homeobox-leucine zipper protein GLABRA 2
STRINGXP_004486751.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47143352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]