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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_004486612.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | WRKY | ||||||||
Protein Properties | Length: 269aa MW: 30642.6 Da PI: 9.2225 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.2 | 9.5e-30 | 141 | 200 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +C+vkkkv+r+ +dp++v+ tYegeHnh+ XP_004486612.1 141 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApTCTVKKKVQRAVDDPSLVVATYEGEHNHP 200 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.8E-28 | 135 | 201 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 25.694 | 136 | 202 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.62E-25 | 138 | 201 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.8E-34 | 141 | 201 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.7E-24 | 142 | 200 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MDYNSSSWIN TSLDLNISLH EQLIINPKNE VENNLFSLGM MTKSSTKLDE YSSRYGLVEE 60 VKRVSEENKK LTGRLTEMCE NYNTLMEYIT KKRKSHSTSS DEHSCMKLPI TTDLEQTSNI 120 HKTKVSRLYF KTQPSDSSLV VKDGYQWRKY GQKVTRDNPS PRAYFKCSFA PTCTVKKKVQ 180 RAVDDPSLVV ATYEGEHNHP QMDPTINHNS SRNKNDSSSS SKNIMMKNSK IEQVPHKFLV 240 EEMATSLTTD LNFRAALAAA ISGKVLNHN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-20 | 140 | 199 | 16 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 4e-20 | 140 | 199 | 16 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 95 | KRKSH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_004486612.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004486612.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 8e-70 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A1S2XDJ8 | 0.0 | A0A1S2XDJ8_CICAR; probable WRKY transcription factor 40 | ||||
STRING | XP_004486612.1 | 0.0 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 3e-67 | WRKY DNA-binding protein 40 |