PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004486100.1
Organism
Cicer arietinum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family FAR1
Protein Properties Length: 761aa    MW: 88137 Da    PI: 7.2768
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004486100.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR164.92.1e-2043118190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     kfY +YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ +              +rtgC a ++v+ +++g+w+v++++++HnH+l+
  XP_004486100.1  43 KFYISYANRMGFKVRIGQLYRSRTDGSVSSRRFVCSKEGHQLN--------------SRTGCPAFIRVQINDSGRWVVDHFHKDHNHNLV 118
                     6**************************************8765..............589****************************97 PP
2FAR162.89.8e-20198273190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY+++A ++GF +r+ +  +sk++g it+r+fvCskeg++++              +r+gCka l++k + +gkw+v++le++HnH+l 
  XP_004486100.1 198 QFYHAHAAHLGFGIRIGQLFRSKNDGLITSRRFVCSKEGFQHP--------------SRVGCKAYLRIKSQPSGKWVVDRLEKDHNHDLG 273
                     6***************************************999..............4899**************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.3E-1643118IPR004330FAR1 DNA binding domain
PfamPF031014.9E-16198273IPR004330FAR1 DNA binding domain
PfamPF105515.1E-27372465IPR018289MULE transposase domain
PROSITE profilePS5096610.373647683IPR007527Zinc finger, SWIM-type
PfamPF044347.8E-9654680IPR007527Zinc finger, SWIM-type
SMARTSM005753.8E-7658685IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 761 aa     Download sequence    Send to blast
MIVKEHPVGT ELAMSNVIGE EEIDFSCDPY IGLEFLSADD ALKFYISYAN RMGFKVRIGQ  60
LYRSRTDGSV SSRRFVCSKE GHQLNSRTGC PAFIRVQIND SGRWVVDHFH KDHNHNLVET  120
ESENSIPKLQ PKAAAAVDYS TEVTRRPRKK LLEVANDEPI CSFGVINFKR LRKEELEGQP  180
RIEPYVGQEF SSPNEAYQFY HAHAAHLGFG IRIGQLFRSK NDGLITSRRF VCSKEGFQHP  240
SRVGCKAYLR IKSQPSGKWV VDRLEKDHNH DLGPEKERET KRLPASNILT EDVNTELVNG  300
DIFRIDNYPV LKGGRQNHIR SDWYNMLTEY FQSRQAEDTG FFHAMEVDNG NCMSIFWADG  360
RSRYACSQFG DVLVVDTSYR KSVYMVPFAT FVGVNHHKQP VLLGCALIAD ESEESFTWLF  420
QTWLRAMSGR QPLSVIADQD VSIQRAIAKV FPVTHHRFSL WQIKAKEQEY AGLLGNGFTK  480
DYEKCVYLNQ TVDEFDTAWN ALLVKYGLKD NDWLKEMYEK RASWVPFYLK GTFSAGIPMK  540
ESMESFFGAL LNGQTPLTEF IPRYERGLER RREEERKEDF NTSNFQPFLQ TKEPVEEQCR  600
RLYTLAIFKV FQKELLQCYS YLGFKIYEEG PLSRYLVRKC GNEMEKHVVT FNASNLDISC  660
SCQMFEYEGV LCRHVLRVFQ ILELSEVPSR YILHRWTRNA EDGVFPDIES WSSSQELKSL  720
MLWSLRETAS KYIDAGASSI EKYKLAYEIL REGGRKLCWN R
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_004486100.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1620300.0AC162030.8 Medicago truncatula clone mth2-178b21, complete sequence.
GenBankAC1691260.0AC169126.2 Medicago truncatula chromosome 2 BAC clone mth2-77e4, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486100.10.0protein FAR1-RELATED SEQUENCE 7-like
SwissprotQ9M8J30.0FRS7_ARATH; Protein FAR1-RELATED SEQUENCE 7
TrEMBLA0A1S2XD350.0A0A1S2XD35_CICAR; protein FAR1-RELATED SEQUENCE 7-like
STRINGXP_004486100.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.10.0FAR1-related sequence 7
Publications ? help Back to Top
  1. Ritter A, et al.
    The transcriptional repressor complex FRS7-FRS12 regulates flowering time and growth in Arabidopsis.
    Nat Commun, 2017. 8: p. 15235
    [PMID:28492275]
  2. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]